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Protein Overview: Lsm10-PA

General Information:
Name(s) found: Lsm10-PA / FBpp0087343 [FlyBase]
Description(s) found:
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  • gi|7303697|gb|AAF58747.1| Lsm10 [Drosophila melanogaster] [NCBI NR]
  • gi|24652555|ref|NP_610615.1| Lsm10 [Drosophila melanogaster] [NCBI NR]
  • The gene Lsm10 is referred to in FlyBase by the symbol Dmel\Lsm10 (CG12938, FBgn0033554). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6708690..6709145. It has the cytological map location 47C1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: histone mRNA 3'-end processing. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG12938-PA translation from_gene[CG12938 CG12938 FBgn0033554] seq_release:3 mol_weight=16440 cds_boundaries:(2R:5,885,917..5,886,339[-]) aa_length:141 transcript_info:[CG12938-RA seq_release:3] gene_info:[gene symbol:CG12938 FBgn0033554 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V5Q2) CG12938 protein [DrosMelano7227.FASTAC.txt]
  • (AE003828) CG12938 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG12938-PA [Drosophila melanogaster]gi|24652555|ref|NP_610615.1| CG12938-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(6708690..6709115); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747; MD5=d74b49e4a24e74ea [fly-100309-contam.fasta]
  • CG12938-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(6708690..6709115); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(6708690..6709115); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Lsm10 OS=Drosophila melanogaster GN=Lsm10 PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(6708690..6709115); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747,FlyMine:FBpp0087343,modMine:FBpp0087343; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(10821185..10821610); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747,FlyMine:FBpp0087343,modMine:FBpp0087343; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(10821185..10821610); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747,FlyMine:FBpp0087343,modMine:FBpp0087343; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0087343 type=protein; loc=2R:complement(10821185..10821610); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747,FlyMine:FBpp0087343,modMine:FBpp0087343; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(10821185..10821610); ID=FBpp0087343; name=Lsm10-PA; parent=FBgn0033554,FBtr0088248; dbxref=FlyBase:FBpp0087343,FlyBase_Annotation_IDs:CG12938-PA,GB_protein:AAF58747.1,REFSEQ:NP_610615,GB_protein:AAF58747,UniProt/TrEMBL:A1Z8C4,FlyMine:FBpp0087343,modMine:FBpp0087343; MD5=d74b49e4a24e74ea0ec44d52cdc9c283; length=141; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 141 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: histone mRNA 3'-end processing [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQFSAREKY LVSNTLNCWP VMLQGHSVLI DLHNETSVAG IIDVADGHMT CELTHAVFID  60
   61 RNGGQHPFDH FMVRNRMIRQ IHIPSYLDAE QELRSAMERG VLRRKRVETK GGKRTFKQKR 120
  121 AEVRHKETLQ MISQQKKNKE T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 23.0 D1 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle