YRC Public Data Repository - Protein Structure Prediction

Protein:	Lsm10-PA
Organism:	Drosophila melanogaster
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lsm10-PA.

Description	E-value	Query Range	Subject Range
gi\|66772131 - gi\|66772131\|gb\|AAY55377.1\| IP04234p [Drosophila melanogaster]	137.0	[0..1]	[135..11]
gi\|66362186 - gi\|66362186\|ref\|XP_628057.1\| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum Iowa ... gi\|46227630 - gi\|46227630\|gb\|EAK88565.1\| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum Iowa II...	121.0	[0..11]	[119..23]
gi\|11138539 - gi\|11138539\|gb\|AAG31434.1\|AF204157_1 snRNP core protein SMX5d [Mus musculus]	119.0	[0..4]	[105..15]
gi\|54657392 - gi\|54657392\|gb\|EAL36172.1\| aspartyl protease-like [Cryptosporidium hominis] gi\|67601489 - gi\|67601489\|ref\|XP_666403.1\| aspartyl protease-like [Cryptosporidium hominis TU502]	119.0	[0..11]	[119..1]
gi\|46101621, gi\|... - gi\|71023653\|ref\|XP_762056.1\| hypothetical protein UM05909.1 [Ustilago maydis 521], ref\|XP_403524.1\| ...	118.0	[0..12]	[118..3]
gi\|125811044, gi... - gi\|54636908\|gb\|EAL26311.1\| GA11923-PA [Drosophila pseudoobscura], gi\|125811044\|ref\|XP_001361732.1\| G...	116.0	[0..1]	[140..1]
gi\|46123175, gi\|... - gi\|46123175\|ref\|XP_386141.1\| hypothetical protein FG05965.1 [Gibberella zeae PH-1], gi\|42552767\|gb\|E...	116.0	[0..10]	[116..252]
gi\|169771623 - gi\|169771623\|ref\|XP_001820281.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|114197651, gi... - gi\|115492327\|ref\|XP_001210791.1\| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]... gi\|220699015, gi... - gi\|238485796\|ref\|XP_002374136.1\| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus ... gi\|83768140 - gi\|83768140\|dbj\|BAE58279.1\| unnamed protein product [Aspergillus oryzae]	115.0	[0..10]	[124..5]
gi\|49088696, gi\|... - gi\|67523101\|ref\|XP_659611.1\| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	115.0	[0..10]	[124..5]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQFSAREKY LVSNTLNCWP VMLQGHSVLI DLHNETSVAG IIDVADGHMT CELTHAVFID  60
   61 RNGGQHPFDH FMVRNRMIRQ IHIPSYLDAE QELRSAMERG VLRRKRVETK GGKRTFKQKR 120
  121 AEVRHKETLQ MISQQKKNKE T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1b34A
Description:	D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits