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Protein Overview: FBpp0311717, CG1...

General Information:
Name(s) found: FBpp0311717 [FlyBase]
CG12338-PA / FBpp0087351 [FlyBase]
Description(s) found:
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  • gi|24652525|ref|NP_610603.2| CG12338 [Drosophila melanogaster] [NCBI NR]
  • gi|21627507|gb|AAF58760.2| CG12338 [Drosophila melanogaster] [NCBI NR]
  • gi|17945988|gb|AAL49038.1| RE49860p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:complement(6617144..6617693,6617763..6617908,6617990..6618113,6618179..6618366); ID=FBpp0311717; name=CG12338-PB; parent=FBgn0033543,FBtr0345662; dbxref=FlyBase:FBpp0311717,FlyBase_Annotation_IDs:CG12338-PB; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG12338 (CG12338, FBgn0033543). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6617080..6618419. It has the cytological map location 47B7. Based on sequence similarity, it is predicted to have molecular function</span>: D-aspartate oxidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: oxidation reduction. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG12338-PA translation from_gene[CG12338 CG12338 FBgn0033543] seq_release:3 mol_weight=37822 cds_boundaries:(2R:5,794,371..5,795,590[-]) aa_length:335 transcript_info:[CG12338-RA seq_release:3] gene_info:[gene symbol:CG12338 FBgn0033543 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V5P1) CG12338 protein (RE49860p) [DrosMelano7227.FASTAC.txt]
  • CG12338-PA [Drosophila melanogaster]gi|17945988|gb|AAL49038.1| RE49860p [Drosophila melanogaster]gi|24652525|ref|NP_610603.2| CG12338-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(6617144..6617693,6617763..6617908,6617990..6618113,6618179..6618366); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSE [fly-100309-contam.fasta]
  • CG12338-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE49860p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(6617144..6617693,6617763..6617908,6617990..6618113,6618179..6618366); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(6617144..6617693,6617763..6617908,6617990..6618113,6618179..6618366); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG12338 OS=Drosophila melanogaster GN=CG12338 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(6617144..6617693,6617763..6617908,6617990..6618113,6618179..6618366); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760,FlyMine:FBpp0087351,modMine:FBpp0087351; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760,FlyMine:FBpp0087351,modMine:FBpp0087351; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0311717; name=CG12338-PB; parent=FBgn0033543,FBtr0345662; dbxref=FlyBase:FBpp0311717,FlyBase_Annotation_IDs:CG12338-PB,GB_protein:AHN56090,REFSEQ:NP_001286292; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760,FlyMine:FBpp0087351,modMine:FBpp0087351; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0311717; name=CG12338-PB; parent=FBgn0033543,FBtr0345662; dbxref=FlyBase:FBpp0311717,FlyBase_Annotation_IDs:CG12338-PB,GB_protein:AHN56090,REFSEQ:NP_001286292; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG12338, isoform A OS=Drosophila melanogaster GN=CG12338 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0087351 type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760,FlyMine:FBpp0087351,modMine:FBpp0087351; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0311717 type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0311717; name=CG12338-PB; parent=FBgn0033543,FBtr0345662; dbxref=FlyBase:FBpp0311717,FlyBase_Annotation_IDs:CG12338-PB,GB_protein:AHN56090,REFSEQ:NP_001286292; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0087351; name=CG12338-PA; parent=FBgn0033543,FBtr0088256; dbxref=GB_protein:AAF58760.2,FlyBase:FBpp0087351,FlyBase_Annotation_IDs:CG12338-PA,REFSEQ:NP_610603,GB_protein:AAF58760,UniProt/TrEMBL:Q7JZB1,FlyMine:FBpp0087351,modMine:FBpp0087351; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:complement(join(10730674..10730861,10730485..10730608,10730258..10730403,10729639..10730188)); ID=FBpp0311717; name=CG12338-PB; parent=FBgn0033543,FBtr0345662; dbxref=FlyBase:FBpp0311717,FlyBase_Annotation_IDs:CG12338-PB,GB_protein:AHN56090,REFSEQ:NP_001286292,UniProt/TrEMBL:Q7JZB1; MD5=0df395f3a9e36d14d2521c8892e77fe0; length=335; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 335 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: oxidation reduction [IEA]
    Molecular Function: D-aspartate oxidase activity [ISS]
    binding [IEA]
    D-amino-acid oxidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFGVLGSGI IGLTTALELQ KEFPTARVSV IADRFNEDTV SYVAAGIFRP GTSFMGPTQK  60
   61 ITQQWMTDAF NYWDELRRSK EAPLAGVCQL SGYIYSRTSP SIVRNHFIEK LLPVYRRATE 120
  121 EELRLCNGGW KYGSFFTTCL TESRLFLPYA TKKFLENGGE VVRQHVNSFF EVPQNIDLLL 180
  181 NCTGMGAKEL CGDQHLVPIR GQVLKVRAPW VKTAFYGDYD TYVLPGFETV TLGGCRQFDS 240
  241 YNTEWCKYDS MAIRERCYDL LPSLRKAEIV RECVGLRPHR SVVRVEPELI TNPEGRRLKV 300
  301 VHNYGHGGYG VTTAPGTAMY AVRLVRDLLA GNSKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 47.522879 D-aminoacid oxidase, N-terminal domain; D-aminoacid oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.08897727611544 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.943208146517927 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors
    		•  0.397770205910041 bayes_pls_golite062009
  • protein binding
    		•  0.247306689726508 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle