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Protein Overview: Lsm11-PA

General Information:
Name(s) found: Lsm11-PA / FBpp0087569 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene Lsm11 is referred to in FlyBase by the symbol Dmel\Lsm11 (CG12924, FBgn0033450). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:5725938..5727005. It has the cytological map location 46B4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: histone mRNA 3'-end processing; regulation of alternative nuclear mRNA splicing, via spliceosome. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC][IDA]
    U7 snRNP [NAS]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    histone mRNA 3'-end processing [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRDRKTSN EDDSSEISEL DVGSDRFNPL RALYEPNFRV TDAVPKVIYQ NLAAFESALK  60
   61 KFGIWQLNKR QKPGSAEGGD QGTSKKASTS EAVDILPPER RFEPHQMPTT SSRKKHHRNI 120
  121 FTYMEAAVGP LELLTKCISP ASHNESNERR RVRVVIRKHG SVGGSVEGEL LAFDKQWNLL 180
  181 LRNVTETWKR RKYNYGEQNI CDTPVDCTGR LKELGITLPR TVVKNLNRKN VEIRRELPQI 240
  241 LIRGENVVLV SLIPTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] deduced N/A No confident structure predictions are available.
    2 View Details [110..256] FFAS03 3.36 D2 core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
    		• 9.01879034070151 bayes_pls_golite062009
  • RNA binding
    		•  5.49978007278445 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.63659317062066 bayes_pls_golite062009
  • binding
    		•  2.57641778478211 bayes_pls_golite062009
  • mRNA binding
    		•  2.42306415646781 bayes_pls_golite062009
  • protein binding
    		•  0.424600155973421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle