| Protein: | Lsm11-PA |
| Organism: | Drosophila melanogaster |
| Length: | 256 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lsm11-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
450.0 | [0..1] | [256..1] |
|
|
297.0 | [0..19] | [253..1] |
|
|
296.0 | [0..18] | [254..17] |
|
|
247.0 | [0..1] | [190..1] |
|
|
247.0 | [0..1] | [190..1] |
|
|
238.0 | [0..1] | [190..70] |
|
|
231.0 | [0..1] | [193..1] |
|
|
228.0 | [0..1] | [190..1] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MESRDRKTSN EDDSSEISEL DVGSDRFNPL RALYEPNFRV TDAVPKVIYQ NLAAFESALK 60
61 KFGIWQLNKR QKPGSAEGGD QGTSKKASTS EAVDILPPER RFEPHQMPT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [110-256] |
1 11 21 31 41 51
| | | | | |
1 TSSRKKHHRN IFTYMEAAVG PLELLTKCIS PASHNESNER RRVRVVIRKH GSVGGSVEGE 60
61 LLAFDKQWNL LLRNVTETWK RRKYNYGEQN ICDTPVDCTG RLKELGITLP RTVVKNLNRK 120
121 NVEIRRELPQ ILIRGENVVL VSLIPTK
|
| Detection Method: | |
| Confidence: | 3.36 |
| Match: | 1b34B |
| Description: | D2 core SNRNP protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 9.01879034070151 | bayes_pls_golite062009 | |
| RNA binding | 5.49978007278445 | bayes_pls_golite062009 |
| nucleic acid binding | 3.63659317062066 | bayes_pls_golite062009 |
| binding | 2.57641778478211 | bayes_pls_golite062009 |
| mRNA binding | 2.42306415646781 | bayes_pls_golite062009 |
| protein binding | 0.424600155973421 | bayes_pls_golite062009 |
