YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: lin-PA

General Information:
Name(s) found: lin-PA / FBpp0087732 [FlyBase]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • The gene lines is referred to in FlyBase by the symbol Dmel\lin (CG11770, FBgn0002552). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:4802033..4805739. It has the cytological map location 44F6-44F7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: catalytic activity. There is experimental evidence that it is involved in the biological process</span>: torso signaling pathway; terminal region determination; wing disc development; hindgut morphogenesis; foregut morphogenesis; epidermis development. 25 alleles are reported. The phenotypes of these alleles are annotated with 25 unique terms, many of which group under: organ system; cuticle; cuticular specialization; embryonic hindgut; spiracle; embryonic foregut; integumentary specialisation; embryonic head; embryonic abdomen; embryonic heart; ectoderm derivative; mouthpart; adult segment. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 858 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    Biological Process: wing disc development [IMP]
    torso signaling pathway [IGI]
    terminal region determination [IGI]
    foregut morphogenesis [IMP]
    epidermis development [IMP]
    oxidation reduction [IEA]
    hindgut morphogenesis [IMP]
    Molecular Function: catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSSAAGSG AGTGDVCPCS TVATSTTSAS NEQPQTKRQK IEQQIKVGSK ALPPQPPHPP  60
   61 DILDLDANSN SHLCSSLSSS SSHSLSTPST ANNSPTTTPC SSRAASYAQL LHNILPQNGD 120
  121 TDLHSQPESA HDEVDRAAKL PNLLTLDTTN GNGSHASSRS NCLQATTATS IDDMLEFEQS 180
  181 LTRQCLCGVS ERTLRKPFQS HYSQDTNGQK RIAYLREWPT NKLLQFLSNL QLLFDIYLKQ 240
  241 NAKGFICTRI MDVCDALIRN DHKLIDEIIV LAGYENSYVQ FLAGRVLAAF LVIAKQELND 300
  301 EWLQKIVDQL FNFEQLDQAA VQKIHFSLDI IKRIVEWKDM EIHPLDDDWM ASANSTSAAS 360
  361 SVVPLSTEAS VSYMHFPVQE QPLATNYFAL QFREDTEGER ETGQEAPDNR DRHRRHFGED 420
  421 MNVAYEPHPA PQSTTMPSGC HVVTLTDSES FDTTHLKCIT IQKLEHKWPT LVKNMSELMA 480
  481 PTHQDAAEHC VLNFLQLWEN IISVKANLSI DETRPYYAQL DKFELLLSHS LSCTVYKQML 540
  541 CLFNEALCYG STLALQDMLP EETCKLAHQI VCHVRGFRIL ESLPRRQPDN MVSLIGYNGK 600
  601 PMVYANGTIT LAHAAQSGDS EEDGAPLDLI EMDKTLLQKM VLLVLKSIAV TVKEIRSDSS 660
  661 DSSIDSTDYD AFQDMMLIER SIRDVLSKLE TFIKQTLEFH PECHFSKILI HLFDDQDDHL 720
  721 IEAMVCTLDV TSGISFRNNA FPELVAMLNP VYTFLEFLKM TSNSSDLLLD LLVSNETCFL 780
  781 LYLLRLLKYI RMNWTMFVHS CHTFGMGSAM LDEAMGVLIR LRLQISRLVS RQLYPYDISP 840
  841 VLRLLESCES LYEGNELS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] deduced N/A No confident structure predictions are available.
    2 View Details [152..378] deduced N/A No confident structure predictions are available.
    3 View Details [379..450] deduced N/A No confident structure predictions are available.
    4 View Details [451..590] MSA 1.011982 View MSA. No confident structure predictions are available.
    5 View Details [591..698] deduced N/A No confident structure predictions are available.
    6 View Details [699..858] MSA 3.013974 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle