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Protein Overview: Nup44A-PC, Nup44...

General Information:
Name(s) found: Nup44A-PA / FBpp0087938 [FlyBase]
Nup44A-PC / FBpp0087937 [FlyBase]
Nup44A-PB / FBpp0087936 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7304117|gb|AAF59154.1| Nup44A, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|24586465|ref|NP_724638.1| Nup44A, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|24586463|ref|NP_724637.1| Nup44A, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21627752|gb|AAM68881.1| Nup44A, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|21627751|gb|AAM68880.1| Nup44A, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|19921784|ref|NP_610343.1| Nup44A, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|16648508|gb|AAL25519.1| SD07614p [Drosophila melanogaster] [NCBI NR]
  • The gene Nup44A is referred to in FlyBase by the symbol Dmel\Nup44A (CG8722, FBgn0033247). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:3875967..3878789. It has the cytological map location 44A2. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of nuclear pore. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG8722-PA translation from_gene[CG8722 nup44A FBgn0033247] seq_release:3 mol_weight=39515 cds_boundaries:(2R:3,050,854..3,052,132[+]) aa_length:354 transcript_info:[CG8722-RA seq_release:3] gene_info:[gene symbol:nup44A FBgn0033247 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG8722-PC translation from_gene[CG8722 nup44A FBgn0033247] seq_release:3 mol_weight=39515 cds_boundaries:(2R:3,050,854..3,052,132[+]) aa_length:354 transcript_info:[CG8722-RC seq_release:3] gene_info:[gene symbol:nup44A FBgn0033247 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG8722-PB translation from_gene[CG8722 nup44A FBgn0033247] seq_release:3 mol_weight=39515 cds_boundaries:(2R:3,050,854..3,052,132[+]) aa_length:354 transcript_info:[CG8722-RB seq_release:3] gene_info:[gene symbol:nup44A FBgn0033247 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (AAM68880) CG8722-PA (CG8722-PB) [DrosMelano7227.FASTAC.txt]
  • (AE003839) CG8722 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG8722-PC, isoform C [Drosophila melanogaster]gi|21627751|gb|AAM68880.1| CG8722-PB, isoform B [Drosophila melanogaster]gi|7304117|gb|AAF59154.1| CG8722-PA, isoform A [Drosophila melanogaster]gi|16648508|gb|AAL25519.1| SD07614p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724 [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724 [fly-100309-contam.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610 [fly-100309-contam.fasta]
  • CG8722-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • SD07614p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Nup44A CG8722-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8722-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Nup44A CG8722-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8722-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Nup44A CG8722-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Nup44A, isoform A OS=Drosophila melanogaster GN=Nup44A PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881,FlyMine:FBpp0087937; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(3877458..3877568,3877630..3878067,3878164..3878372,3878433..3878739); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154,modMine:FBpp0087938; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Nup44A, isoform A OS=Drosophila melanogaster GN=Nup44A PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881,FlyMine:FBpp0087937; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154,modMine:FBpp0087938; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881,FlyMine:FBpp0087937; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154,modMine:FBpp0087938; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Nucleoporin at 44A, isoform A OS=Drosophila melanogaster GN=Nup44A PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0087936 type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0087937 type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881,FlyMine:FBpp0087937; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0087938 type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154,modMine:FBpp0087938; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087936; name=Nup44A-PB; parent=FBgn0033247,FBtr0088860; dbxref=FlyBase:FBpp0087936,FlyBase_Annotation_IDs:CG8722-PB,GB_protein:AAM68880.1,REFSEQ:NP_724637,GB_protein:AAM68880,UniProt/TrEMBL:Q7K2X8; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087937; name=Nup44A-PC; parent=FBgn0033247,FBtr0088861; dbxref=FlyBase:FBpp0087937,FlyBase_Annotation_IDs:CG8722-PC,GB_protein:AAM68881.1,REFSEQ:NP_724638,GB_protein:AAM68881,UniProt/TrEMBL:Q7K2X8,FlyMine:FBpp0087937; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(7989953..7990063,7990125..7990562,7990659..7990867,7990928..7991234); ID=FBpp0087938; name=Nup44A-PA; parent=FBgn0033247,FBtr0088862; dbxref=FlyBase:FBpp0087938,FlyBase_Annotation_IDs:CG8722-PA,GB_protein:AAF59154.1,REFSEQ:NP_610343,GB_protein:AAF59154,UniProt/TrEMBL:Q7K2X8,modMine:FBpp0087938; MD5=bd86d5d502c836f13a41af43248f6cf9; length=354; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: nuclear pore [ISS]
    Biological Process: NONE FOUND
    Molecular Function: structural constituent of nuclear pore [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDVEPIIAD HKDVIHDVVF DYYGRRMATC SSDQTVKIWD EDGQGKWNVT SSWKAHSGSI  60
   61 WRVSWAHPEF GQVVATCSFD RTASVWEEVI GEKVSSTNTP TRRWVRRTTL VDSRTSVTDV 120
  121 EFAPKYLGLL LATASADGII RIYEAPDIMN LSQWPVQHEI SNKLPLSCLS WNTSTYMVTQ 180
  181 LLAAGSDEAA TPTGKVFLFA YSENSRKCVK IDTVNDITDP VTDVAFAPNA GRTFHMLAVA 240
  241 SKDLYIVNLR GVTDATDISK LDIQTIKFSE HNCPVWRVCW NMLATMLIST GDDGCVRLWR 300
  301 MNYNRQWRCA AVLKAEGSGP TYEPAPPTPT LATTASATAK FYKKGTIGNQ VPWH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 46.0 No description for 2pm7B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle