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Protein Overview: CG18853-PA

General Information:
Name(s) found: CG18853-PA / FBpp0088442 [FlyBase]
Description(s) found:
Found 18 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG18853 (CG18853, FBgn0042173).The gene has a gene model, but the supporting evidence is inconclusive. It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:3716562..3717902. It has the cytological map location 43E18. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: deoxyribodipyrimidine photo-lyase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: DNA repair. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 330 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    Molecular Function: deoxyribodipyrimidine photo-lyase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEDDLKSQL TIARNEINNL RQQVRNLQHV QRKDIETITR LLQDFRCEGC ANNNKSAKDK  60
   61 VAGEKQEHQH QQQTQDQQTG QGQSNYTNGG HCLGEDYAHF RPIGVIRTAF PEKRAVPRQS 120
  121 IVGSRLRGII QLNDGVFTNP EHSLEGLEDF SHLWLIYHFH RNNSHPKAKA DNFCFYNEHY 180
  181 DSLKGLSSWA YQTLDAHRKD KRDPCYSLEE LEKSLTYDDL WNSAQLQLVR EGKMHGFLRM 240
  241 YWAKKILEWT ATPEHALEYA ILLNDKYSLD GRDPNGYVGC MWSIGGVHDM GWKERAIFGK 300
  301 VRYMNYQGCR RKFDVNAFVM RYGGKVHKKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] MSA 2.063989 View MSA. No confident structure predictions are available.
    2 View Details [80..231] PSI-BLAST 25.045757 X-Ray Structure Of YaeB from Haemophilus influenzae. Northeast Structural Genomics Research Consortium (NESGC)target IR47.
    3 View Details [232..330] FFAS03 1.68 No description for 2ijgX was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle