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View Structure Prediction Details

Protein: CG18853-PA
Organism: Drosophila melanogaster
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18853-PA.

Description E-value Query
Range
Subject
Range
gi|688103 - gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
445.0 [0..8] [330..194]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEDDLKSQL TIARNEINNL RQQVRNLQHV QRKDIETITR LLQDFRCEGC ANNNKSAKDK  60
   61 VAGEKQEHQH QQQTQDQQT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQGQSNYTNG GHCLGEDYAH FRPIGVIRTA FPEKRAVPRQ SIVGSRLRGI IQLNDGVFTN  60
   61 PEHSLEGLED FSHLWLIYHF HRNNSHPKAK ADNFCFYNEH YDSLKGLSSW AYQTLDAHRK 120
  121 DKRDPCYSLE ELEKSLTYDD LWNSAQLQLV RE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.045757
Match: 1xqbA
Description: X-Ray Structure Of YaeB from Haemophilus influenzae. Northeast Structural Genomics Research Consortium (NESGC)target IR47.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [232-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKMHGFLRMY WAKKILEWTA TPEHALEYAI LLNDKYSLDG RDPNGYVGCM WSIGGVHDMG  60
   61 WKERAIFGKV RYMNYQGCRR KFDVNAFVMR YGGKVHKKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.68
Match: 2ijgX
Description: No description for 2ijgX was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle