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Protein Overview: lbm-PA, FBpp0307822

General Information:
Name(s) found: FBpp0307822 [FlyBase]
lbm-PA / FBpp0088104 [FlyBase]
Description(s) found:
Found 31 descriptions.
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  • type=protein; loc=2R:join(2937549..2937608,2938568..2938726,2938783..2939118,2939181..2939252); ID=FBpp0307822; name=lbm-PB; parent=FBgn0016032,FBtr0336873; dbxref=FlyBase:FBpp0307822,FlyBase_Annotation_IDs:CG2374-PB,REFSEQ:NP_001260757,GB_protein:AGB93290; MD5=956dcc01417776122fdfc2e1fbd139cd; length=208; release=r5.56; species=Dmel; [FlyBase]
  • The gene late bloomer is referred to in FlyBase by the symbol Dmel\lbm (CG2374, FBgn0016032). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:2937301..2939470. It has the cytological map location 42E6. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: synapse assembly. 11 alleles are reported. The phenotypes of these alleles are annotated with: RP3 neuron; growth cone; synapse; presynaptic ribbon. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 208 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA][ISS][NAS]
    extracellular region [IDA][ISS]
    Biological Process: synapse assembly [IMP][NAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCATTSVKI ASIVLNAVLG FLAAGAIGWI AYNADTETEE FVIAAYIACS LILVFALLGI  60
   61 FAAIRESVVL TATSAVFLLI LAILQIVSTC LFLHEFDVKS GRDMVEVAWQ ANNMDSLQQK 120
  121 HECCGQSSAQ DYIHLSLLIP PSCYADLQQT PDHLYLDGCI EKVQSFYESD KLRFIIVSWV 180
  181 LVAFELICFA LAVFLAISFK NKQRRMEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] MSA 7.394996 View MSA. No confident structure predictions are available.
    2 View Details [74..208] PSI-BLAST 4.221849 CD81 extracellular domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.26688015347446 bayes_pls_golite062009
  • protein binding
    		•  0.690517649847952 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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