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Protein Overview: vimar-PB

General Information:
Name(s) found: vimar-PB / FBpp0089175 [FlyBase]
Description(s) found:
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  • gi|7302328|gb|AAF57418.1| visceral mesodermal armadillo-repeats, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|17137458|ref|NP_477305.1| visceral mesodermal armadillo-repeats, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene visceral mesodermal armadillo-repeats is referred to in FlyBase by the symbol Dmel\vimar (CG3572, FBgn0022960). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:2862787..2873214. It has the cytological map location 42E1. Based on sequence similarity, it is predicted to have molecular function</span>: Ral GTPase binding. The biological processes in which it is involved are not known. 17 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG3572-PA translation from_gene[CG3572 vimar FBgn0022960] seq_release:3 mol_weight=70255 cds_boundaries:(2R:2,037,458..2,046,320[-]) aa_length:634 transcript_info:[CG3572-RA seq_release:3] gene_info:[gene symbol:vimar FBgn0022960 gene_boundaries:(2R:2 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V978) CG3572-PA [DrosMelano7227.FASTAC.txt]
  • (AE003790) vimar gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG3572-PB, isoform B [Drosophila melanogaster]gi|17137458|ref|NP_477305.1| CG3572-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866102,2872917..2872923); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:N [fly-100309-contam.fasta]
  • CG3572-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • visceral mesodermal armadillo-repeats CG3572-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866102,2872917..2872923); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866102,2872917..2872923); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • RE54322p OS=Drosophila melanogaster GN=vimar PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866102,2872917..2872923); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418,FlyMine:FBpp0089175,modMine:FBpp0089175; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978597,6977216..6977602,6976553..6977157)); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418,FlyMine:FBpp0089175,modMine:FBpp0089175; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978597,6977216..6977602,6976553..6977157)); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418,FlyMine:FBpp0089175,modMine:FBpp0089175; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A1Z6S7, RE54322p OS=Drosophila melanogaster GN=vimar PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0089175 type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978597,6977216..6977602,6976553..6977157)); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418,FlyMine:FBpp0089175,modMine:FBpp0089175; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978597,6977216..6977602,6976553..6977157)); ID=FBpp0089175; name=vimar-PB; parent=FBgn0022960,FBtr0086183; dbxref=FlyBase:FBpp0089175,FlyBase_Annotation_IDs:CG3572-PB,GB_protein:AAF57418.1,REFSEQ:NP_477305,GB_protein:AAF57418,UniProt/TrEMBL:A1Z6S6,FlyMine:FBpp0089175,modMine:FBpp0089175; MD5=7f836fe95de7b4c562fda5a61dc62d03; length=634; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 634 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: Ral GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEIDDLIE KLKTTSVSPA NTTNLLCEIS ATKDPKLFDK HELAECFLGL TKCDDTNVRK  60
   61 EAAKCIAEIT KSEVQRKKFT KRNIIAAFLE CLRQVPTSDG SMELPIQICR ALGNICYLND 120
  121 EARDLILELE GDAVLLRLLD ITTIEDVANA AQFIKVRGGL LSNYLLGGEG LAKRAMELGV 180
  181 MKKLQGIIDI GASNVEQHED LLLNTLPLLS ILTENVSDLN FDSSLNIQLS RILAASTNPD 240
  241 LAEMCLELLH YQAESDEVKL ILAKDGLCET IYNLLEKYKT LASTSEARAL MKLACELIVL 300
  301 ILTGDDSMHY LYTTPLLKNM VDWLDSTDID LLTTGVLALG NFARTDSHCI YFVEQQTMNK 360
  361 LLEVLAKNNG VKDDVRLQHA LLSALRNLVI PKPNKNAVIQ AGLVQTILPM LEIHQPPVVF 420
  421 KLLGTLRMTV DGQEKLALEL LKNKTLIEQL VHWSKSSDYA GVTGESLRLM AWLIKHAYLS 480
  481 KIAYALPRKG DAPAEQIADK IPLTQDYDRS SLSEFLANEG TVEAMVSMLT AQHLVMQNEA 540
  541 LIALCILSVV YLSQPSEAAQ AQLLQDELVK CEVGKKLAEL ISKSSDTMTK EIVENLQNCV 600
  601 NLLKSSEQLV AHLEQHNINE LLKSIPILTE YCTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..555] PSI-BLAST 62.0 No description for 2gl7A was found.
    2 View Details [556..634] PSI-BLAST 61.154902 Mouse Importin alpha- phosphorylated SV40 CN peptide complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle