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Protein Overview: jing-PB

General Information:
Name(s) found: jing-PB / FBpp0112911 [FlyBase]
Description(s) found:
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  • gi|7302264|gb|AAF57355.1| jing, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|24586002|ref|NP_573391.2| 1.28 CG9397-PA [Drosophila melanogaster] [NCBI NR]
  • gi|161076343|ref|NP_001097197.1| jing, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene jing is referred to in FlyBase by the symbol Dmel\jing (CG9397, FBgn0086655). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:2389764..2506901. It has the cytological map location 42C1-42B2. There is experimental evidence that it has the molecular function</span>: transcription repressor activity. There is experimental evidence that it is involved in the biological process</span>: central nervous system development; border follicle cell migration; axon guidance; leg disc proximal/distal pattern formation; glial cell migration; tissue regeneration; imaginal disc-derived wing vein specification; specification of segmental identity, maxillary segment; open tracheal system development. 71 alleles are reported. The phenotypes of these alleles are annotated with 26 unique terms, many of which group under: embryonic nervous system; nervous system; organ system; embryonic neuron; embryonic glial cell; commissure; multi-cell-component structure; external compound sense organ; peripheral nervous system; adult trachea. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • >CG9397-PA translation from_gene[CG9397 1.28 FBgn0010347] seq_release:3 mol_weight=22058 cds_boundaries:(2R:1,563,941..1,564,591[+]) aa_length:217 transcript_info:[CG9397-RA seq_release:3] gene_info:[gene symbol:1.28 FBgn0010347 gene_boundaries:(2R:1,5 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V9D6) 1.28 protein [DrosMelano7227.FASTAC.txt]
  • (AE003789) 1.28 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG9397-PA [Drosophila melanogaster]gi|24586002|ref|NP_573391.2| CG9397-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(2390544..2391193,2415517..2415520); ID=FBpp0112911; name=jing-PB; parent=FBgn0086655,FBtr0114362; dbxref=FlyBase:FBpp0112911,FlyBase:FBpp0085439,FlyBase_Annotation_IDs:CG9397-PB,FlyBase_Annotation_IDs:CG9397-PA,REFSEQ:NP_00109719 [fly-100309-contam.fasta]
  • CG9397-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 1.28 CG9397-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(2390544..2391193,2415517..2415520); ID=FBpp0112911; name=jing-PB; parent=FBgn0086655,FBtr0114362; dbxref=FlyBase:FBpp0112911,FlyBase:FBpp0085439,FlyBase_Annotation_IDs:CG9397-PB,FlyBase_Annotation_IDs:CG9397-PA,REFSEQ:NP_001097197,GB_protein:AAF57355; MD5=3e3d551e134b8a385613683f60ddfc74; length=217; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(2390544..2391193,2415517..2415520); ID=FBpp0112911; name=jing-PB; parent=FBgn0086655,FBtr0114362; dbxref=FlyBase:FBpp0112911,FlyBase:FBpp0085439,FlyBase_Annotation_IDs:CG9397-PB,FlyBase_Annotation_IDs:CG9397-PA,REFSEQ:NP_001097197,GB_protein:AAF57355; MD5=3e3d551e134b8a385613683f60ddfc74; length=217; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Jing, isoform B OS=Drosophila melanogaster GN=jing PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(2390544..2391193,2415517..2415520); ID=FBpp0112911; name=jing-PB; parent=FBgn0086655,FBtr0114362; dbxref=FlyBase:FBpp0112911,FlyBase:FBpp0085439,FlyBase_Annotation_IDs:CG9397-PB,FlyBase_Annotation_IDs:CG9397-PA,REFSEQ:NP_001097197,GB_protein:AAF57355,FlyMine:FBpp0112911,modMine:FBpp0112911; MD5=3e3d551e134b8a385613683f60ddfc74; length=217; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 217 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS][NAS]
    Biological Process: central nervous system development [IMP]
    specification of segmental identity, maxillary segment [IEP][IGI]
    axon guidance [IMP]
    border follicle cell migration [IMP]
    imaginal disc-derived wing vein specification [IMP]
    regulation of transcription [NAS]
    tissue regeneration [IMP]
    open tracheal system development [IMP]
    leg disc proximal/distal pattern formation [IMP]
    glial cell migration [IMP]
    Molecular Function: transcription factor activity [NAS]
    zinc ion binding [IEA]
    transcription repressor activity [IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTQPKDTA LKTKESAAEV AAPLAPLSVK TAGATGRKTL TSSAALSLFD QLKNSVNTNS  60
   61 LTIGAGVGNN SSPEATPPIT APASTTTASP ILTPKSPPPT PPINKSPSLS SNIELKPPAK 120
  121 PARPFTSPST IGIVQGTKRG VGGVFGGFGA QAAKLDINAL RSQLYQGARK TATTSRVGVG 180
  181 KTTTVATAPR TTGGERGTKG SKKRCLDRYD SSESSDR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] MSA 1.002981 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle