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Protein Overview: Or42b-PA

General Information:
Name(s) found: Or42b-PA / FBpp0085387 [FlyBase]
Description(s) found:
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  • gi|22023974|ref|NP_523624.2| odorant receptor 42b [Drosophila melanogaster] [NCBI NR]
  • gi|21626835|gb|AAF57305.2| odorant receptor 42b [Drosophila melanogaster] [NCBI NR]
  • gi|14285628|sp|Q9V9I4.2|OR42B_DROME RecName: Full=Putative odorant receptor 42b [NCBI NR]
  • Odorant receptor 42b OS=Drosophila melanogaster GN=Or42b PE=2 SV=2 [Swiss-Prot]
  • (Q9V9I4) Putative odorant receptor 42b [Swiss-Prot]
  • The gene Odorant receptor 42b is referred to in FlyBase by the symbol Dmel\Or42b (CG12754, FBgn0033043). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1684700..1686017. It has the cytological map location 41F11. There is experimental evidence that it has the molecular function</span>: olfactory receptor activity. There is experimental evidence that it is involved in the biological process</span>: sensory perception of smell. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG12754-PA translation from_gene[CG12754 Or42b FBgn0033043] seq_release:3 mol_weight=46075 cds_boundaries:(2R:936,069..937,383[-]) aa_length:399 transcript_info:[CG12754-RA seq_release:3] gene_info:[gene symbol:Or42b FBgn0033043 gene_boundaries:(2R:93 [hmr_yeast5_DM3-1_pombe.fasta]
  • CG12754-PA [Drosophila melanogaster]gi|22023974|ref|NP_523624.2| CG12754-PA [Drosophila melanogaster]gi|14285628|sp|Q9V9I4|O42B_DROME Putative odorant receptor 42b [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(1684700..1684774,1684839..1685196,1685251..1686017); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_prot [fly-100309-contam.fasta]
  • CG12754-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Putative odorant receptor 42b [nr-271106-contam.fasta]
  • Odorant receptor 42b CG12754-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(1684700..1684774,1684839..1685196,1685251..1686017); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(1684700..1684774,1684839..1685196,1685251..1686017); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Putative odorant receptor 42b OS=Drosophila melanogaster GN=Or42b PE=3 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • Odorant receptor 42b OS=Drosophila melanogaster GN=Or42b PE=3 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(1684700..1684774,1684839..1685196,1685251..1686017); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305,FlyMine:FBpp0085387,modMine:FBpp0085387; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(5797746..5798512,5797334..5797691,5797195..5797269)); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305,FlyMine:FBpp0085387,modMine:FBpp0085387; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(5797746..5798512,5797334..5797691,5797195..5797269)); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305,FlyMine:FBpp0085387,modMine:FBpp0085387; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0085387 type=protein; loc=2R:complement(join(5797746..5798512,5797334..5797691,5797195..5797269)); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305,FlyMine:FBpp0085387,modMine:FBpp0085387; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(5797746..5798512,5797334..5797691,5797195..5797269)); ID=FBpp0085387; name=Or42b-PA; parent=FBgn0033043,FBtr0086051; dbxref=FlyBase:FBpp0085387,FlyBase_Annotation_IDs:CG12754-PA,GB_protein:AAF57305.2,REFSEQ:NP_523624,GB_protein:AAF57305,UniProt/Swiss-Prot:Q9V9I4,FlyMine:FBpp0085387,modMine:FBpp0085387; MD5=199b0ae93f5bbe2e281b0c73e385f92a; length=399; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 399 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    integral to membrane [ISS]
    Biological Process: sensory perception of smell [IMP][ISS]
    Molecular Function: odorant binding [IEA]
    olfactory receptor activity [IMP][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFELIRPAP LTEQKRSRDG CIYLYRAMKF IGWLPPKQGV LRYVYLTWTL MTFVWCTTYL  60
   61 PLGFLGSYMT QIKSFSPGEF LTSLQVCINA YGSSVKVAIT YSMLWRLIKA KNILDQLDLR 120
  121 CTAMEEREKI HLVVARSNHA FLIFTFVYCG YAGSTYLSSV LSGRPPWQLY NPFIDWHDGT 180
  181 LKLWVASTLE YMVMSGAVLQ DQLSDSYPLI YTLILRAHLD MLRERIRRLR SDENLSEAES 240
  241 YEELVKCVMD HKLILRYCAI IKPVIQGTIF TQFLLIGLVL GFTLINVFFF SDIWTGIASF 300
  301 MFVITILLQT FPFCYTCNLI MEDCESLTHA IFQSNWVDAS RRYKTTLLYF LQNVQQPIVF 360
  361 IAGGIFQISM SSNISVAKFA FSVITITKQM NIADKFKTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] MSA 2.328997 View MSA. No confident structure predictions are available.
    2 View Details [121..255] MSA 1.377996 View MSA. No confident structure predictions are available.
    3 View Details [256..399] MSA 10.377996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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