YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or42b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFELIRPAP LTEQKRSRDG CIYLYRAMKF IGWLPPKQGV LRYVYLTWTL MTFVWCTTYL  60
   61 PLGFLGSYMT QIKSFSPGEF LTSLQVCINA YGSSVKVAIT YSMLWRLIKA KNILDQLDLR 120
  121 CTAMEEREKI HLVVARSNHA FLIFTFVYCG YAGSTYLSSV LSGRPPWQLY NPFIDWHDGT 180
  181 LKLWVASTLE YMVMSGAVLQ DQLSDSYPLI YTLILRAHLD MLRERIRRLR SDENLSEAES 240
  241 YEELVKCVMD HKLILRYCAI IKPVIQGTIF TQFLLIGLVL GFTLINVFFF SDIWTGIASF 300
  301 MFVITILLQT FPFCYTCNLI MEDCESLTHA IFQSNWVDAS RRYKTTLLYF LQNVQQPIVF 360
  361 IAGGIFQISM SSNISVAKFA FSVITITKQM NIADKFKTD

Type	Start	End	Confidence
Cytoplasmic	1	42	0.90
Transmembrane Helix	43	65	0.86
Non-Cytoplasmic	66	80	0.80
Transmembrane Helix	81	104	0.68
Cytoplasmic	105	138	0.83
Transmembrane Helix	139	160	0.80
Non-Cytoplasmic	161	202	0.62
Transmembrane Helix	203	219	0.44
Cytoplasmic	220	267	0.82
Transmembrane Helix	268	290	0.84
Non-Cytoplasmic	291	295	0.58
Transmembrane Helix	296	317	0.79
Cytoplasmic	318	399	0.57