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Protein Overview: Or42a-PA

General Information:
Name(s) found: Or42a-PA / FBpp0085388 [FlyBase]
Description(s) found:
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  • gi|22096371|sp|Q9V9I2.3|OR42A_DROME RecName: Full=Putative odorant receptor 42a [NCBI NR]
  • gi|22023972|ref|NP_523622.2| odorant receptor 42a [Drosophila melanogaster] [NCBI NR]
  • gi|21626834|gb|AAF57307.2| odorant receptor 42a [Drosophila melanogaster] [NCBI NR]
  • Odorant receptor 42a OS=Drosophila melanogaster GN=Or42a PE=2 SV=3 [Swiss-Prot]
  • (Q9V9I2) Putative odorant receptor 42a [Swiss-Prot]
  • The gene Odorant receptor 42a is referred to in FlyBase by the symbol Dmel\Or42a (CG17250, FBgn0033041). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1679001..1680468. It has the cytological map location 41F11. Based on sequence similarity, it is predicted to have molecular function</span>: olfactory receptor activity. There is experimental evidence that it is involved in the biological process</span>: olfactory behavior; detection of chemical stimulus involved in sensory perception of smell. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG17250-PA translation from_gene[CG17250 Or42a FBgn0033041] seq_release:3 mol_weight=46917 cds_boundaries:(2R:930,370..931,834[-]) aa_length:406 transcript_info:[CG17250-RA seq_release:3] gene_info:[gene symbol:Or42a FBgn0033041 gene_boundaries:(2R:93 [hmr_yeast5_DM3-1_pombe.fasta]
  • CG17250-PA [Drosophila melanogaster]gi|22023972|ref|NP_523622.2| CG17250-PA [Drosophila melanogaster]gi|22096371|sp|Q9V9I2|O42A_DROME Putative odorant receptor 42a [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(1679001..1679087,1679150..1679507,1679693..1680468); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_prot [fly-100309-contam.fasta]
  • CG17250-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Odorant receptor 42a CG17250-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Putative odorant receptor 42a [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(1679001..1679087,1679150..1679507,1679693..1680468); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(1679001..1679087,1679150..1679507,1679693..1680468); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Putative odorant receptor 42a OS=Drosophila melanogaster GN=Or42a PE=2 SV=3 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(1679001..1679087,1679150..1679507,1679693..1680468); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307,FlyMine:FBpp0085388,modMine:FBpp0085388; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(5792188..5792963,5791645..5792002,5791496..5791582)); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307,FlyMine:FBpp0085388,modMine:FBpp0085388; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(5792188..5792963,5791645..5792002,5791496..5791582)); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307,FlyMine:FBpp0085388,modMine:FBpp0085388; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0085388 type=protein; loc=2R:complement(join(5792188..5792963,5791645..5792002,5791496..5791582)); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307,FlyMine:FBpp0085388,modMine:FBpp0085388; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(5792188..5792963,5791645..5792002,5791496..5791582)); ID=FBpp0085388; name=Or42a-PA; parent=FBgn0033041,FBtr0086052; dbxref=FlyBase:FBpp0085388,FlyBase_Annotation_IDs:CG17250-PA,GB_protein:AAF57307.2,REFSEQ:NP_523622,GB_protein:AAF57307,UniProt/Swiss-Prot:Q9V9I2,FlyMine:FBpp0085388,modMine:FBpp0085388; MD5=483c5b076e6f10367a75a6717aa0be73; length=406; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    integral to membrane [ISS]
    Biological Process: sensory perception of smell [ISS]
    detection of chemical stimulus involved in sensory perception of smell [IMP]
    olfactory behavior [IMP]
    Molecular Function: odorant binding [IEA]
    olfactory receptor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRRWFPTL YTQSKDSPVR SRDATLYLLR CVFLMGVRKP PAKFFVAYVL WSFALNFCST  60
   61 FYQPIGFLTG YISHLSEFSP GEFLTSLQVA FNAWSCSTKV LIVWALVKRF DEANNLLDEM 120
  121 DRRITDPGER LQIHRAVSLS NRIFFFFMAV YMVYATNTFL SAIFIGRPPY QNYYPFLDWR 180
  181 SSTLHLALQA GLEYFAMAGA CFQDVCVDCY PVNFVLVLRA HMSIFAERLR RLGTYPYESQ 240
  241 EQKYERLVQC IQDHKVILRF VDCLRPVISG TIFVQFLVVG LVLGFTLINI VLFANLGSAI 300
  301 AALSFMAAVL LETTPFCILC NYLTEDCYKL ADALFQSNWI DEEKRYQKTL MYFLQKLQQP 360
  361 ITFMAMNVFP ISVGTNISVT KFSFSVFTLV KQMNISEKLA KSEMEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] MSA 2.342996 View MSA. No confident structure predictions are available.
    2 View Details [108..231] deduced N/A No confident structure predictions are available.
    3 View Details [232..406] MSA 16.391997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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