YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or42a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRRWFPTL YTQSKDSPVR SRDATLYLLR CVFLMGVRKP PAKFFVAYVL WSFALNFCST  60
   61 FYQPIGFLTG YISHLSEFSP GEFLTSLQVA FNAWSCSTKV LIVWALVKRF DEANNLLDEM 120
  121 DRRITDPGER LQIHRAVSLS NRIFFFFMAV YMVYATNTFL SAIFIGRPPY QNYYPFLDWR 180
  181 SSTLHLALQA GLEYFAMAGA CFQDVCVDCY PVNFVLVLRA HMSIFAERLR RLGTYPYESQ 240
  241 EQKYERLVQC IQDHKVILRF VDCLRPVISG TIFVQFLVVG LVLGFTLINI VLFANLGSAI 300
  301 AALSFMAAVL LETTPFCILC NYLTEDCYKL ADALFQSNWI DEEKRYQKTL MYFLQKLQQP 360
  361 ITFMAMNVFP ISVGTNISVT KFSFSVFTLV KQMNISEKLA KSEMEE

Type	Start	End	Confidence
Cytoplasmic	1	43	0.97
Transmembrane Helix	44	66	0.89
Non-Cytoplasmic	67	83	0.88
Transmembrane Helix	84	107	0.79
Cytoplasmic	108	142	0.94
Transmembrane Helix	143	166	0.91
Non-Cytoplasmic	167	194	0.86
Transmembrane Helix	195	218	0.65
Cytoplasmic	219	266	0.82
Transmembrane Helix	267	293	0.78
Non-Cytoplasmic	294	298	0.49
Transmembrane Helix	299	320	0.67
Cytoplasmic	321	406	0.61