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Protein Overview: FBpp0304596, CG1...

General Information:
Name(s) found: FBpp0304596 [FlyBase]
CG10026-PC / FBpp0080779 [FlyBase]
CG10026-PA / FBpp0080777 [FlyBase]
Description(s) found:
Found 39 descriptions.
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  • type=protein; loc=2L:join(19456433..19456568,19456630..19456724,19456824..19457168,19457228..19457406,19457476..19457593); ID=FBpp0304596; name=CG10026-PD; parent=FBgn0032785,FBtr0332317; dbxref=FlyBase:FBpp0304596,FlyBase_Annotation_IDs:CG10026-PD,REFSEQ:NP_001260581,GB_protein:AGB93116; MD5=23a423b0e5ac8a2bfcde397c150bb099; length=290; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG10026 (CG10026, FBgn0032785). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:19454256..19457726. It has the cytological map location 37E1. Based on sequence similarity, it is predicted to have molecular function</span>: retinal binding; vitamin E binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: transport. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG10026 (CG10026, FBgn0032785). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:19454256..19457726. It has the cytological map location 37E1. Based on sequence similarity, it is predicted to have molecular function</span>: retinal binding; vitamin E binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: transport. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 290 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: transport [IEA]
    Molecular Function: retinal binding [ISS]
    vitamin E binding [ISS]
    transporter activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIEHKLNI TEEEVPEHIR RLAQEQGECP SSKDKVIEQF RNYILEHNEC QPHRSDAKYL  60
   61 EKFLRARYWK IENSYKLLCS YYRFREQNKS FYEKVRPLDL RHVGQSDILT VTPYRDQHGH 120
  121 RILIYRFGLW RPNQVTVDDI FRATIVLQEL GSLEPISQIV GGVGIFDLKD LGLEHILHLS 180
  181 PSVAQKMIAL LVTSMPIRTS ALHIVNQNWV FNAAFKIFKP FLNAAMREKL YIHGSDMTSL 240
  241 HKHINPEHLP KRYGGLHEDY SYTLWLDMLK EQCSGNSIQK DMEQLGFIFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..290] PSI-BLAST 49.522879 The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • vitamin E binding
    		•  7.60287756659728 bayes_pls_golite062009
  • retinoid binding
    		•  2.55932836548393 bayes_pls_golite062009
  • isoprenoid binding
    		•  2.50048436206147 bayes_pls_golite062009
  • vitamin binding
    		•  1.77103204070558 bayes_pls_golite062009
  • binding
    		•  1.64101337554248 bayes_pls_golite062009
  • retinal binding
    		•  1.32654212303069 bayes_pls_golite062009
  • protein binding
    		•  0.408110742195811 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle