YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0304596, CG1...
Organism:	Drosophila melanogaster
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0304596, CG1....

Description	E-value	Query Range	Subject Range
TTPAL - tocopherol (alpha) transfer protein-like	250.0	[0..14]	[284..35]
gi\|55725059 - gi\|55725059\|emb\|CAH89397.1\| hypothetical protein [Pongo abelii] TTPAL_PONAB - Alpha-tocopherol transfer protein-like OS=Pongo abelii GN=TTPAL PE=2 SV=1	249.0	[0..14]	[284..35]
gi\|114682122, gi... - gi\|114682124\|ref\|XP_001152483.1\| PREDICTED: similar to chromosome 20 open reading frame 121 isoform ...	249.0	[0..14]	[284..35]
gi\|109091885, gi... - gi\|109091887\|ref\|XP_001110534.1\| PREDICTED: hypothetical protein LOC79183 isoform 3 [Macaca mulatta]...	249.0	[0..14]	[284..35]
gi\|57104224 - gi\|57104224\|ref\|XP_534426.1\| PREDICTED: similar to Protein C20orf121 homolog [Canis familiaris]	249.0	[0..14]	[283..35]
gi\|157818193, gi... - gi\|34860761\|ref\|XP_230830.2\| PREDICTED: similar to Protein C20orf121 homolog [Rattus norvegicus], gi...	248.0	[0..14]	[284..36]
TTPAL_MOUSE - Alpha-tocopherol transfer protein-like OS=Mus musculus GN=Ttpal PE=1 SV=3	247.0	[0..14]	[284..36]
gi\|76633790 - gi\|76633790\|ref\|XP_604955.2\| PREDICTED: hypothetical LOC526582 [Bos taurus]	245.0	[0..1]	[286..22]
gi\|89268211, gi\|... - gi\|89268211\|emb\|CAJ82567.1\| Novel protein containing CRAL/TRIO domain [Xenopus tropicalis], gi\|62859...	245.0	[0..14]	[276..32]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIEHKLNI TEEEVPEHIR RLAQEQGECP SSKDKVIEQF RNYILEHNEC QPHRSDAKYL  60
   61 EKFLRARYWK IENSYKLLCS YYRFREQNKS FYEKVRPLDL RHVGQSDILT VTPYRDQHGH 120
  121 RILIYRFGLW RPNQVTVDDI FRATIVLQEL GSLEPISQIV GGVGIFDLKD LGLEHILHLS 180
  181 PSVAQKMIAL LVTSMPIRTS ALHIVNQNWV FNAAFKIFKP FLNAAMREKL YIHGSDMTSL 240
  241 HKHINPEHLP KRYGGLHEDY SYTLWLDMLK EQCSGNSIQK DMEQLGFIFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1oipA
Description:	The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
vitamin E binding	7.60287756659728	bayes_pls_golite062009
retinoid binding	2.55932836548393	bayes_pls_golite062009
isoprenoid binding	2.50048436206147	bayes_pls_golite062009
vitamin binding	1.77103204070558	bayes_pls_golite062009
binding	1.64101337554248	bayes_pls_golite062009
retinal binding	1.32654212303069	bayes_pls_golite062009
protein binding	0.408110742195811	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: