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Protein Overview: Lim3-PA

General Information:
Name(s) found: Lim3-PA / FBpp0080713 [FlyBase]
Description(s) found:
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  • gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster] [NCBI NR]
  • The gene Lim3 is referred to in FlyBase by the symbol Dmel\Lim3 (CG10699, FBgn0002023). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:19079234..19108108. It has the cytological map location 37B13-37C1. Based on sequence similarity, it is predicted to have molecular function</span>: transcription factor activity. There is experimental evidence that it is involved in the biological process</span>: motor axon guidance. 24 alleles are reported. The phenotypes of these alleles are annotated with: abdominal segmental nerve; abdominal intersegmental nerve. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG10699-PA translation from_gene[CG10699 Lim3 FBgn0002023] seq_release:3 mol_weight=48971 cds_boundaries:(2L:19,058,287..19,061,111[-]) aa_length:440 transcript_info:[CG10699-RA seq_release:3] gene_info:[gene symbol:Lim3 synonyms:[CG15174] FBgn0002023 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VJ02) LIM3 protein [DrosMelano7227.FASTAC.txt]
  • (AE003661) Lim3 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG10699-PA, isoform A [Drosophila melanogaster]gi|17136270|ref|NP_476606.1| CG10699-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(19080201..19080496,19080561..19080755,19081015..19081166,19081230..19081422,19081492..19081694,19081820..19081994,19082920..19083028); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713 [fly-100309-contam.fasta]
  • CG10699-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Lim3 CG10699-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(19080201..19080496,19080561..19080755,19081015..19081166,19081230..19081422,19081492..19081694,19081820..19081994,19082920..19083028); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(19080201..19080496,19080561..19080755,19081015..19081166,19081230..19081422,19081492..19081694,19081820..19081994,19082920..19083028); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Lim3, isoform A OS=Drosophila melanogaster GN=Lim3 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:complement(19080201..19080496,19080561..19080755,19081015..19081166,19081230..19081422,19081492..19081694,19081820..19081994,19082920..19083028); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756,FlyMine:FBpp0080713,modMine:FBpp0080713; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(join(19082920..19083028,19081820..19081994,19081492..19081694,19081230..19081422,19081015..19081166,19080561..19080755,19080201..19080496)); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756,FlyMine:FBpp0080713,modMine:FBpp0080713; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(19082920..19083028,19081820..19081994,19081492..19081694,19081230..19081422,19081015..19081166,19080561..19080755,19080201..19080496)); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756,FlyMine:FBpp0080713,modMine:FBpp0080713; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q24400, Lim3, isoform A OS=Drosophila melanogaster GN=Lim3 PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0080713 type=protein; loc=2L:complement(join(19082920..19083028,19081820..19081994,19081492..19081694,19081230..19081422,19081015..19081166,19080561..19080755,19080201..19080496)); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756,FlyMine:FBpp0080713,modMine:FBpp0080713; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(19082920..19083028,19081820..19081994,19081492..19081694,19081230..19081422,19081015..19081166,19080561..19080755,19080201..19080496)); ID=FBpp0080713; name=Lim3-PA; parent=FBgn0002023,FBtr0081170; dbxref=FlyBase:FBpp0080713,FlyBase_Annotation_IDs:CG10699-PA,GB_protein:AAF53756.1,REFSEQ:NP_476606,GB_protein:AAF53756,UniProt/TrEMBL:Q9VJ02,FlyMine:FBpp0080713,modMine:FBpp0080713; MD5=2ec25d531d3508c3a576fca8fbbf1355; length=440; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS][NAS]
    Biological Process: motor axon guidance [IMP]
    nervous system development [TAS]
    regulation of transcription, DNA-dependent [IEA][ISS]
    regulation of transcription [IEA]
    Molecular Function: transcription factor activity [ISS]
    zinc ion binding [IEA]
    specific RNA polymerase II transcription factor activity [NAS]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLKLMMFK SDFLSNGKCD DRVPPINLSQ LPEFLLSTIP KCGGCHELIL DRFILKVLER  60
   61 TWHAKCLQCS ECHGQLNDKC FARNGQLFCK EDFFKRYGTK CSACDMGIPP TQVVRRAQDN 120
  121 VYHLQCFLCA MCSRTLNTGD EFYLMEDRKL ICKRDYEEAK AKGLYLDGSL DGDQPNKRPR 180
  181 TTITAKQLET LKTAYNNSPK PARHVREQLS QDTGLDMRVV QVWFQNRRAK EKRLKKDAGR 240
  241 TRWSQYFRSM KGNCSPRTDK FLDKDELKVD YDSFSHHDLS NDSYSTVNLG LDEGASPHSI 300
  301 RGSYMHGSSS PSQYPPSSRS PPPVGQGHTF GSYPDNIVYT NIDQAVGSSL HASKAHHRLH 360
  361 SSNNVSDLSN DSSPDQGYPD FPPSPDSWLG DSGSTNTTSA NNNANNNSSS SHNNNNSSGG 420
  421 GSGGVSVSTA PNPSAPGVHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle