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Protein Overview: Rpb11-PA

General Information:
Name(s) found: Rpb11-PA / FBpp0080564 [FlyBase]
Description(s) found:
Found 23 descriptions.
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  • The gene Rpb11 is referred to in FlyBase by the symbol Dmel\Rpb11 (CG6840, FBgn0032634). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:17409696..17410368. It has the cytological map location 36C7. Based on sequence similarity, it is predicted to have molecular function</span>: DNA-directed RNA polymerase activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: transcription from RNA polymerase II promoter. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 117 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    DNA-directed RNA polymerase II, core complex [ISS]
    Biological Process: transcription [IEA][NAS]
    transcription from RNA polymerase II promoter [ISS]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [ISS][NAS]
    protein dimerization activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPPTFESF LLYEGEKKII KELDTKVTNA AIFTINKEDH TLGNMIRNQL LKDPNVLFAG  60
   61 YKVPHPLEHK FVIRIQTTAD YSPQEAFMNA ITDLLAELSL FEERFKDAIK EKKEGGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 34.39794 RPB11


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle