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Protein Overview: RpL13-PB, FBpp03...

General Information:
Name(s) found: FBpp0302626 [FlyBase]
RpL13-PB / FBpp0099517 [FlyBase]
RpL13-PA / FBpp0079484 [FlyBase]
Description(s) found:
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  • gi|85724916|ref|NP_001033891.1| ribosomal protein L13, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|84795291|gb|ABC65888.1| ribosomal protein L13, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|730528|sp|P41126.1|RL13_DROME RecName: Full=60S ribosomal protein L13; AltName: Full=BBC1 protein homolog [NCBI NR]
  • gi|7297588|gb|AAF52842.1| ribosomal protein L13, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|467734|emb|CAA54898.1| BBC1 protein [Drosophila melanogaster] [NCBI NR]
  • gi|218506003|gb|ACK77643.1| LD24350p [Drosophila melanogaster] [NCBI NR]
  • gi|17647879|ref|NP_523530.1| ribosomal protein L13, isoform A [Drosophila melanogaster] [NCBI NR]
  • pir||JC4260 breast basic conserved protein 1 - fruit fly (Drosophila melanogaster) [NCBI NR]
  • 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1 [Swiss-Prot]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC,REFSEQ:NP_001260312,GB_protein:AGB92847; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein L13 is referred to in FlyBase by the symbol Dmel\RpL13 (CG4651, FBgn0011272). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:9967312..9968495. It has the cytological map location 30F3. There is experimental evidence that it has the molecular function</span>: SUMO binding. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG4651-PA translation from_gene[CG4651 RpL13 FBgn0011272] seq_release:3 mol_weight=24951 cds_boundaries:(2L:9,960,044..9,960,827[+]) aa_length:218 transcript_info:[CG4651-RA seq_release:3] gene_info:[gene symbol:RpL13 FBgn0011272 gene_boundaries:(2L:9 [hmr_yeast5_DM3-1_pombe.fasta]
  • (P41126) 60S ribosomal protein L13 (BBC1 protein homolog) [DrosMelano7227.FASTAC.txt]
  • (AE003626) RpL13 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG4651-PA [Drosophila melanogaster]gi|17647879|ref|NP_523530.1| CG4651-PA [Drosophila melanogaster]gi|467734|emb|CAA54898.1| BBC1 protein [Drosophila melanogaster]gi|1363910|pir||JC4260 breast basic conserved protein 1 - fruit fly (Drosophila melanogas [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF [fly-100309-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein: [fly-100309-contam.fasta]
  • Ribosomal protein L13 CG4651-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 60S ribosomal protein L13 (BBC1 protein homolog) [nr-271106-contam.fasta]
  • Ribosomal protein L13 CG4651-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • BBC1 protein [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG4651-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG4651-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13-RB PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888,FlyMine:FBpp0099517,modMine:FBpp0099517; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=3 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888,FlyMine:FBpp0099517,modMine:FBpp0099517; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC,REFSEQ:NP_001260312,GB_protein:AGB92847; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888,FlyMine:FBpp0099517,modMine:FBpp0099517; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC,REFSEQ:NP_001260312,GB_protein:AGB92847; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of P41126, 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0079484 type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0099517 type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888,FlyMine:FBpp0099517,modMine:FBpp0099517; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0302626 type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC,REFSEQ:NP_001260312,GB_protein:AGB92847; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0079484; name=RpL13-PA; parent=FBgn0011272,FBtr0079888; dbxref=GB_protein:AAF52842.1,FlyBase:FBpp0079484,FlyBase_Annotation_IDs:CG4651-PA,REFSEQ:NP_523530,GB_protein:AAF52842,UniProt/Swiss-Prot:P41126; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0099517; name=RpL13-PB; parent=FBgn0011272,FBtr0100164; dbxref=FlyBase_Annotation_IDs:CG4651-PB,FlyBase:FBpp0099517,GB_protein:ABC65888.1,REFSEQ:NP_001033891,GB_protein:ABC65888,UniProt/Swiss-Prot:P41126,FlyMine:FBpp0099517,modMine:FBpp0099517; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(9967635..9967877,9967939..9968247,9968317..9968421); ID=FBpp0302626; name=RpL13-PC; parent=FBgn0011272,FBtr0310482; dbxref=FlyBase:FBpp0302626,FlyBase_Annotation_IDs:CG4651-PC,REFSEQ:NP_001260312,GB_protein:AGB92847,UniProt/Swiss-Prot:P41126; MD5=6aea7ab718156ab77fd20fc1241572d5; length=218; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic large ribosomal subunit [ISS]
    ribosome [NAS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS]
    Molecular Function: SUMO binding [IPI]
    structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGNNMIPN QHYHKWWQRH VKTWFNQPAR KVRRHANRVK KAKAVFPRPA SGALRPVVRC  60
   61 PTIRYHTKLR AGRGFTLEEL KGAGIGANFA KTIGIAVDRR RKNKSLESRQ RNIQRLKEYR 120
  121 SKLILFPINE KKIRAGESSL EECKLATQLK GPVLPIKNEQ PAVVEFREVT KDEKKFKAFA 180
  181 TLRKARTDAR LVGIRAKRAK EAAESEDAAK GDPKKAKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] Pfam 142.283997 No description for PF01294.9 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle