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View Structure Prediction Details

Protein: RpL13-PB, FBpp03...
Organism: Drosophila melanogaster
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL13-PB, FBpp03....

Description E-value Query
Range
Subject
Range
gi|74267768 - gi|74267768|gb|AAI02866.1| RPL13 protein [Bos taurus]
332.0 [0..3] [211..4]
gi|94381470, gi|... - gi|94382983|ref|XP_998719.1| PREDICTED: similar to ribosomal protein L13 [Mus musculus], gi|94381470...
303.0 [0..3] [216..4]
RL13_RAT - 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
301.0 [0..3] [211..4]
gi|60653373 - gi|60653373|gb|AAX29381.1| ribosomal protein L13 [synthetic construct]
297.0 [0..3] [211..4]
gi|73956810, gi|... - gi|73956810|ref|XP_860360.1| PREDICTED: similar to ribosomal protein L13 isoform 3 [Canis familiaris...
295.0 [0..3] [211..4]
gi|41150665, gi|... - gi|89042438|ref|XP_947268.1| PREDICTED: similar to RPL13 protein isoform 5 [Homo sapiens], gi|411506...
294.0 [0..3] [211..4]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGNNMIPN QHYHKWWQRH VKTWFNQPAR KVRRHANRVK KAKAVFPRPA SGALRPVVRC  60
   61 PTIRYHTKLR AGRGFTLEEL KGAGIGANFA KTIGIAVDRR RKNKSLESRQ RNIQRLKEYR 120
  121 SKLILFPINE KKIRAGESSL EECKLATQLK GPVLPIKNEQ PAVVEFREVT KDEKKFKAFA 180
  181 TLRKARTDAR LVGIRAKRAK EAAESEDAAK GDPKKAKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 142.283997
Match: PF01294.9
Description: No description for PF01294.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle