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Protein Overview: RpS13-PB, RpS13-...

General Information:
Name(s) found: FBpp0312104 [FlyBase]
RpS13-PB / FBpp0099990 [FlyBase]
RpS13-PA / FBpp0079328 [FlyBase]
Description(s) found:
Found 45 descriptions.
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  • type=protein; loc=2L:complement(8363821..8364125,8364188..8364315,8364541..8364563); ID=FBpp0312104; name=RpS13-PC; parent=FBgn0010265,FBtr0346454; dbxref=FlyBase:FBpp0312104,FlyBase_Annotation_IDs:CG13389-PC; MD5=64e6acba0b4cb2697fd1862d9d26fa02; length=151; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S13 is referred to in FlyBase by the symbol Dmel\RpS13 (CG13389, FBgn0010265). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:8363692..8364609. It has the cytological map location 29B2. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 7 alleles are reported. The phenotype of these alleles is annotated with: macrochaeta. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene Ribosomal protein S13 is referred to in FlyBase by the symbol Dmel\RpS13 (CG13389, FBgn0010265). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:8363692..8364609. It has the cytological map location 29B2. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 7 alleles are reported. The phenotype of these alleles is annotated with: macrochaeta. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 151 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS][NAS]
    ribosome [NAS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [ISS][NAS]
    Molecular Function: structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHAPGKG ISQSALPYRR TVPSWLKLNA DDVKEQIKKL GKKGLTPSKI GIILRDSHGV  60
   61 AQVRFVNGNK ILRIMKSVGL KPDIPEDLYH MIKKAVAIRK HLERNRKDKD GKFRLILVES 120
  121 RIHRLARYYK TKSVLPPNWK YESSTASALV A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..61] Pfam 37.769551 No description for PF08069.3 was found. No confident structure predictions are available.
    2 View Details [62..151] PSI-BLAST 24.221849 Localization and dynamic behavior of ribosomal protein L30e


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle