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Protein Overview: CG8353-PA, FBpp0...

General Information:
Name(s) found: FBpp0304688 [FlyBase]
CG8353-PA / FBpp0079214 [FlyBase]
Description(s) found:
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  • gi|7297362|gb|AAF52622.1| CG8353 [Drosophila melanogaster] [NCBI NR]
  • gi|19920920|ref|NP_609196.1| CG8353 [Drosophila melanogaster] [NCBI NR]
  • gi|17944360|gb|AAL48072.1| RE70243p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB,REFSEQ:NP_001260233,GB_protein:AGB92769; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG8353 (CG8353, FBgn0032002). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:8214305..8215239. It has the cytological map location 28F3. Based on sequence similarity, it is predicted to have molecular function</span>: cytidine deaminase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: cytidine metabolic process. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG8353-PA translation from_gene[CG8353 CG8353 FBgn0032002] seq_release:3 mol_weight=18610 cds_boundaries:(2L:8,206,649..8,207,342[+]) aa_length:170 transcript_info:[CG8353-RA seq_release:3] gene_info:[gene symbol:CG8353 FBgn0032002 gene_boundaries:(2L [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VLR2) CG8353 protein (RE70243p) [DrosMelano7227.FASTAC.txt]
  • (AE003620) CG8353 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG8353-PA [Drosophila melanogaster]gi|17944360|gb|AAL48072.1| RE70243p [Drosophila melanogaster]gi|19920920|ref|NP_609196.1| CG8353-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622; MD5=37cd4 [fly-100309-contam.fasta]
  • CG8353-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE70243p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG8353 OS=Drosophila melanogaster GN=CG8353 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622,FlyMine:FBpp0079214,modMine:FBpp0079214; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622,FlyMine:FBpp0079214,modMine:FBpp0079214; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB,REFSEQ:NP_001260233,GB_protein:AGB92769; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB,REFSEQ:NP_001260233,GB_protein:AGB92769; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622,FlyMine:FBpp0079214,modMine:FBpp0079214; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG8353, isoform A OS=Drosophila melanogaster GN=CG8353 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0079214 type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622,FlyMine:FBpp0079214,modMine:FBpp0079214; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304688 type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB,REFSEQ:NP_001260233,GB_protein:AGB92769; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0079214; name=CG8353-PA; parent=FBgn0032002,FBtr0079593; dbxref=FlyBase:FBpp0079214,FlyBase_Annotation_IDs:CG8353-PA,GB_protein:AAF52622.1,REFSEQ:NP_609196,GB_protein:AAF52622,UniProt/TrEMBL:Q9VLR2,FlyMine:FBpp0079214,modMine:FBpp0079214; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(8214418..8214487,8214672..8215114); ID=FBpp0304688; name=CG8353-PB; parent=FBgn0032002,FBtr0332415; dbxref=FlyBase:FBpp0304688,FlyBase_Annotation_IDs:CG8353-PB,REFSEQ:NP_001260233,GB_protein:AGB92769,UniProt/TrEMBL:Q9VLR2; MD5=37cd4305ed32f3ef9a1c56a46f0aa8c5; length=170; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 170 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cytidine metabolic process [IEA]
    Molecular Function: zinc ion binding [IEA]
    cytidine deaminase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLTKNFAR PEKNEEVVTF GSLDPSVQEL LTAAFQVRQR AYVPYSGFKV GAAFRAKVDG  60
   61 KIFTGCNVEN AAFTPGSCAE RTAIAKAVSE GATEFLAGAV LAYEPNVFTT PCGVCRQFIR 120
  121 EFANADIPIY VAQAIDARIA EKQELLQSDD PVMCTSIFNL LPSSFHTYRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] PSI-BLAST 44.09691 No description for 2d30A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytidine deaminase activity
    		•  4.42667374679603 bayes_pls_golite062009
  • deaminase activity
    		•  2.76997916054448 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  2.27736397496642 bayes_pls_golite062009
  • catalytic activity
    		•  1.70756445127105 bayes_pls_golite062009
  • binding
    		•  1.64474382695496 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  1.51294035758003 bayes_pls_golite062009
  • IMP cyclohydrolase activity
    		•  1.34771936728813 bayes_pls_golite062009
  • receptor binding
    		•  1.25331530291023 bayes_pls_golite062009
  • hydrolase activity
    		•  1.20889076546073 bayes_pls_golite062009
  • phosphoribosylaminoimidazolecarboxamide formyltransferase activity
    		•  1.06178740854563 bayes_pls_golite062009
  • nucleoside binding
    		•  0.66793245260795 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  0.36832789692523 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  0.308525511259279 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.25533482618887 bayes_pls_golite062009
  • protein binding
    		•  0.072557222523031 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.0520808212384716 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle