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Protein Overview: tomb-PA

General Information:
Name(s) found: tomb-PA / FBpp0078758 [FlyBase]
Description(s) found:
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  • gi|7296988|gb|AAF52259.1| tombola [Drosophila melanogaster] [NCBI NR]
  • gi|24581949|ref|NP_608936.1| tombola [Drosophila melanogaster] [NCBI NR]
  • The gene tombola is referred to in FlyBase by the symbol Dmel\tomb (CG14016, FBgn0031715). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:5535933..5536726. It has the cytological map location 25E5. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: male meiosis. 2 alleles are reported. The phenotype of these alleles is annotated with: testis. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG14016-PA translation from_gene[CG14016 CG14016 FBgn0031715] seq_release:3 mol_weight=26180 cds_boundaries:(2L:5,528,151..5,528,941[-]) aa_length:243 transcript_info:[CG14016-RA seq_release:3] gene_info:[gene symbol:CG14016 FBgn0031715 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VMQ3) CG14016 protein [DrosMelano7227.FASTAC.txt]
  • (AE003610) CG14016 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG14016-PA [Drosophila melanogaster]gi|24581949|ref|NP_608936.1| CG14016-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(5535933..5536495,5536558..5536726); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259; MD5= [fly-100309-contam.fasta]
  • tombola CG14016-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG14016-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(5535933..5536495,5536558..5536726); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(5535933..5536495,5536558..5536726); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • RT06796p OS=Drosophila melanogaster GN=tomb PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:complement(5535933..5536495,5536558..5536726); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259,FlyMine:FBpp0078758,modMine:FBpp0078758; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • RT06796p1 OS=Drosophila melanogaster GN=tomb PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:complement(join(5536558..5536726,5535933..5536495)); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259,FlyMine:FBpp0078758,modMine:FBpp0078758; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(5536558..5536726,5535933..5536495)); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259,FlyMine:FBpp0078758,modMine:FBpp0078758; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0078758 type=protein; loc=2L:complement(join(5536558..5536726,5535933..5536495)); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259,FlyMine:FBpp0078758,modMine:FBpp0078758; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(5536558..5536726,5535933..5536495)); ID=FBpp0078758; name=tomb-PA; parent=FBgn0031715,FBtr0079127; dbxref=FlyBase:FBpp0078758,FlyBase_Annotation_IDs:CG14016-PA,GB_protein:AAF52259.1,REFSEQ:NP_608936,GB_protein:AAF52259,UniProt/TrEMBL:Q9VMQ3,FlyMine:FBpp0078758,modMine:FBpp0078758; MD5=6e077634a7495441c5ad310aa4ffe3df; length=243; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: male meiosis [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPKKRSVD KADGKKGKGQ GAGGVKGCCC KRSQCIKNYC DCYQSMAICT KFCRCVGCRN  60
   61 TEVRELVDPN SVAKNSSAVK RQKAAAMSAK AAAAAAKAGI DVQGKALQVA ASTLALPGKA 120
  121 LMTPPKYTLV AGKPPMASSH INPIPISRPI ATAATPARAV KQPAEPPMPV NLIIPVRHDD 180
  181 RRDRNLFVQP VNAALLECML IQATEAEQLG LNELQVCQLV LEEFMRGYKN ILEKICEYSK 240
  241 DYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] MSA 26.059997 View MSA. No confident structure predictions are available.
    2 View Details [116..243] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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