Description(s) found:
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gi|7296931|gb|AAF52204.1| collagen type IV, isoform A [Drosophila melanogaster]
[NCBI NR]
gi|24581824|ref|NP_723046.1| collagen type IV, isoform C [Drosophila melanogaster]
[NCBI NR]
gi|24581822|ref|NP_723045.1| collagen type IV, isoform B [Drosophila melanogaster]
[NCBI NR]
gi|24581820|ref|NP_723044.1| collagen type IV, isoform A [Drosophila melanogaster]
[NCBI NR]
gi|22945626|gb|AAN10520.1| collagen type IV, isoform C [Drosophila melanogaster]
[NCBI NR]
gi|22945625|gb|AAN10519.1| collagen type IV, isoform B [Drosophila melanogaster]
[NCBI NR]
gi|161788954|sp|P08120.3|CO4A1_DROME RecName: Full=Collagen alpha-1(IV) chain; Flags: Precursor
[NCBI NR]
Collagen alpha-1(IV) chain OS=Drosophila melanogaster GN=Cg25C PE=2 SV=3
[Swiss-Prot]
The gene Collagen type IV is referred to in FlyBase by the symbol Dmel\Cg25C (CG4145, FBgn0000299). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:5029615..5037114. It has the cytological map location 25C1. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: binding; extracellular matrix structural constituent. It is reported to be involved in the biological process</span>: dorsal closure. 21 alleles are reported. The phenotypes of these alleles are annotated with: larval brain; larval optic lobe; head; embryonic/larval somatic muscle; larval central nervous system; larval visceral muscle. It has 3 annotated transcripts and 3 annotated polypeptides.
[FlyBase]
>CG4145-PA translation from_gene[CG4145 Cg25C FBgn0000299] seq_release:3 mol_weight=174303 cds_boundaries:(2L:5,022,789..5,029,305[+]) aa_length:1779 transcript_info:[CG4145-RA seq_release:3] gene_info:[gene symbol:Cg25C FBgn0000299 gene_boundaries:(2L
[hmr_yeast5_DM3-1_pombe.fasta]
>CG4145-PB translation from_gene[CG4145 Cg25C FBgn0000299] seq_release:3 mol_weight=174303 cds_boundaries:(2L:5,022,789..5,029,305[+]) aa_length:1779 transcript_info:[CG4145-RB seq_release:3] gene_info:[gene symbol:Cg25C FBgn0000299 gene_boundaries:(2L
[hmr_yeast5_DM3-1_pombe.fasta]
>CG4145-PC translation from_gene[CG4145 Cg25C FBgn0000299] seq_release:3 mol_weight=174303 cds_boundaries:(2L:5,022,789..5,029,305[+]) aa_length:1779 transcript_info:[CG4145-RC seq_release:3] gene_info:[gene symbol:Cg25C FBgn0000299 gene_boundaries:(2L
[hmr_yeast5_DM3-1_pombe.fasta]
(AE003608) Cg25C gene product [Drosophila melanogaster]
[yeastflysequest.fasta]
CG4145-PC, isoform C [Drosophila melanogaster]gi|22945625|gb|AAN10519.1| CG4145-PB, isoform B [Drosophila melanogaster]gi|7296931|gb|AAF52204.1| CG4145-PA, isoform A [Drosophila melanogaster]gi|24581824|ref|NP_723046.1| CG4145-PC [Drosophila melanogast
[nrdb_11152004_Chlamydomonas]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,F
[fly-100309-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,F
[fly-100309-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,F
[fly-100309-contam.fasta]
CG4145-PA, isoform A [Drosophila melanogaster]
[nr-271106-contam.fasta]
CG4145-PB, isoform B [Drosophila melanogaster]
[nr-271106-contam.fasta]
Collagen type IV CG4145-PC, isoform C [Drosophila melanogaster]
[nr-271106-contam.fasta]
Collagen type IV CG4145-PB, isoform B [Drosophila melanogaster]
[nr-271106-contam.fasta]
Collagen type IV CG4145-PA, isoform A [Drosophila melanogaster]
[nr-271106-contam.fasta]
CG4145-PC, isoform C [Drosophila melanogaster]
[nr-271106-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.16; species=Dmel;
[fly-contam-His-TEV-Tub4complex.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.16; species=Dmel;
[fly-contam-His-TEV-Tub4complex.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.16; species=Dmel;
[fly-contam-His-TEV-Tub4complex.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.21; species=Dmel;
[Other_drosophila_na_09-09-2009_reversed.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.21; species=Dmel;
[Other_drosophila_na_09-09-2009_reversed.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.21; species=Dmel;
[Other_drosophila_na_09-09-2009_reversed.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.46; species=Dmel;
[fly-062812-sfps-sandra-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.46; species=Dmel;
[fly-062812-sfps-sandra-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204,FlyMine:FBpp0078642,modMine:FBpp0078642; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r5.46; species=Dmel;
[fly-062812-sfps-sandra-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.02; species=Dmel;
[fly-2014-05-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.02; species=Dmel;
[fly-2014-05-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204,FlyMine:FBpp0078642,modMine:FBpp0078642; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.02; species=Dmel;
[fly-2014-05-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.07; species=Dmel;
[fly-08202015-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204,FlyMine:FBpp0078642,modMine:FBpp0078642; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.07; species=Dmel;
[fly-08202015-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.07; species=Dmel;
[fly-08202015-contam.fasta]
FBpp0078640 type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Cg25C-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.09; species=Dmel;
[dmel-all-translation-r6.09.fasta]
FBpp0078641 type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Cg25C-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.09; species=Dmel;
[dmel-all-translation-r6.09.fasta]
FBpp0078642 type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Cg25C-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204,FlyMine:FBpp0078642,modMine:FBpp0078642; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.09; species=Dmel;
[dmel-all-translation-r6.09.fasta]
[fly-122215-dmel-6-09-contam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078640; name=Col4a1-PC; parent=FBgn0000299,FBtr0079001; dbxref=FlyBase:FBpp0078640,FlyBase_Annotation_IDs:CG4145-PC,GB_protein:AAN10520.1,REFSEQ:NP_723046,GB_protein:AAN10520,UniProt/Swiss-Prot:P08120; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.14; species=Dmel;
[fly-dmel-jan2017-sandracontam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078641; name=Col4a1-PB; parent=FBgn0000299,FBtr0079002; dbxref=FlyBase:FBpp0078641,FlyBase_Annotation_IDs:CG4145-PB,GB_protein:AAN10519.1,REFSEQ:NP_723045,GB_protein:AAN10519,UniProt/Swiss-Prot:P08120; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.14; species=Dmel;
[fly-dmel-jan2017-sandracontam.fasta]
type=protein; loc=2L:join(5030218..5030237,5030742..5030790,5030855..5031802,5031878..5032374,5032500..5033950,5034013..5034981,5035064..5036208,5036477..5036737); ID=FBpp0078642; name=Col4a1-PA; parent=FBgn0000299,FBtr0079003; dbxref=FlyBase:FBpp0078642,FlyBase_Annotation_IDs:CG4145-PA,GB_protein:AAF52204.1,REFSEQ:NP_723044,GB_protein:AAF52204,UniProt/Swiss-Prot:P08120,FlyMine:FBpp0078642,modMine:FBpp0078642; MD5=90fd819d7eb397ce044fb52b4f3eca12; length=1779; release=r6.14; species=Dmel;
[fly-dmel-jan2017-sandracontam.fasta]
|