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Protein Overview: Rrp40-PA, FBpp03...

General Information:
Name(s) found: FBpp0311555 [FlyBase]
Rrp40-PA / FBpp0077551 [FlyBase]
Description(s) found:
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  • gi|72083300|gb|AAZ66314.1| RE44908p [Drosophila melanogaster] [NCBI NR]
  • gi|24580923|ref|NP_722725.1| CG31938 [Drosophila melanogaster] [NCBI NR]
  • gi|22945471|gb|AAN10459.1| CG31938 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0311555; name=Rrp40-PB; parent=FBgn0260648,FBtr0345430; dbxref=FlyBase:FBpp0311555,FlyBase_Annotation_IDs:CG31938-PB; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\Rrp40 (CG31938, FBgn0260648). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:1728735..1729575. It has the cytological map location 22B1. Based on sequence similarity, it is predicted to have molecular function</span>: 3'-5'-exoribonuclease activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: rRNA processing. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG31938-PA translation from_gene[CG31938 CG31938 FBgn0051938] seq_release:3 mol_weight=25026 cds_boundaries:(2L:1,730,494..1,731,189[+]) aa_length:232 transcript_info:[CG31938-RA seq_release:3] gene_info:[gene symbol:CG31938 FBgn0051938 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8IPX7) CG31938-PA [DrosMelano7227.FASTAC.txt]
  • CG31938-PA [Drosophila melanogaster]gi|24580923|ref|NP_722725.1| CG31938-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459; MD5=9bcb87060f57b3bf0a395a87c413 [fly-100309-contam.fasta]
  • RE44908p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG31938-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • RE44908p OS=Drosophila melanogaster GN=Rrp40 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459,FlyMine:FBpp0077551,modMine:FBpp0077551; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459,FlyMine:FBpp0077551,modMine:FBpp0077551; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0311555; name=Rrp40-PB; parent=FBgn0260648,FBtr0345430; dbxref=FlyBase:FBpp0311555,FlyBase_Annotation_IDs:CG31938-PB,GB_protein:AHN54080,REFSEQ:NP_001285565; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459,FlyMine:FBpp0077551,modMine:FBpp0077551; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0311555; name=Rrp40-PB; parent=FBgn0260648,FBtr0345430; dbxref=FlyBase:FBpp0311555,FlyBase_Annotation_IDs:CG31938-PB,GB_protein:AHN54080,REFSEQ:NP_001285565; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • RE44908p OS=Drosophila melanogaster GN=Rrp40 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0077551 type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459,FlyMine:FBpp0077551,modMine:FBpp0077551; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0311555 type=protein; loc=2L:1728829..1729527; ID=FBpp0311555; name=Rrp40-PB; parent=FBgn0260648,FBtr0345430; dbxref=FlyBase:FBpp0311555,FlyBase_Annotation_IDs:CG31938-PB,GB_protein:AHN54080,REFSEQ:NP_001285565; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0077551; name=Rrp40-PA; parent=FBgn0260648,FBtr0077883; dbxref=FlyBase:FBpp0077551,FlyBase_Annotation_IDs:CG31938-PA,GB_protein:AAN10459.1,REFSEQ:NP_722725,GB_protein:AAN10459,UniProt/TrEMBL:Q8IPX7,FlyMine:FBpp0077551,modMine:FBpp0077551; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:1728829..1729527; ID=FBpp0311555; name=Rrp40-PB; parent=FBgn0260648,FBtr0345430; dbxref=FlyBase:FBpp0311555,FlyBase_Annotation_IDs:CG31938-PB,GB_protein:AHN54080,REFSEQ:NP_001285565,UniProt/TrEMBL:Q8IPX7; MD5=9bcb87060f57b3bf0a395a87c4138d87; length=232; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 232 amino acids

    Gene Ontology:
    Cellular Component: nuclear exosome (RNase complex) [IPI][ISS]
    cytoplasm [IDA]
    exosome (RNase complex) [ISS]
    Biological Process: rRNA processing [ISS]
    Molecular Function: 3'-5'-exoribonuclease activity [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATSTIVMP GERIAAIEEL AKSKRVILGP GLRRLDDTVV ASKAGPLRHK EPGTFWVDNY  60
   61 QRRYIPARGD LILGIVRAKA GDLYRVDIGA TDTASISYLA FEAASKKNRP DLIPGDLIYA 120
  121 RVLNASADIE PELVCVNSVG KSGKLGVLTD GFFFKCSLNL GRMLLRENCP VLAALTRELP 180
  181 YEIAVGVNGR IWLKAHSLKE TVALANAISA LEQSGCAEID KICGNLGDFL QA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle