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Protein Overview: Atg4-PA

General Information:
Name(s) found: Atg4-PA / FBpp0077618 [FlyBase]
Description(s) found:
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  • gi|7296129|gb|AAF51423.1| Autophagy-specific gene 4 [Drosophila melanogaster] [NCBI NR]
  • gi|19920488|ref|NP_608563.1| Autophagy-specific gene 4 [Drosophila melanogaster] [NCBI NR]
  • gi|16198037|gb|AAL13802.1| LD26292p [Drosophila melanogaster] [NCBI NR]
  • The gene Autophagy-specific gene 4 is referred to in FlyBase by the symbol Dmel\Atg4 (CG4428, FBgn0031298). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:1080913..1083378. It has the cytological map location 21E4. Based on sequence similarity, it is predicted to have molecular function</span>: cysteine-type endopeptidase activity. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG4428-PA translation from_gene[CG4428 CG4428 FBgn0031298] seq_release:3 mol_weight=45646 cds_boundaries:(2L:1,082,910..1,084,534[+]) aa_length:411 transcript_info:[CG4428-RA seq_release:3] gene_info:[gene symbol:CG4428 FBgn0031298 gene_boundaries:(2L [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VPW2) CG4428 protein (LD26292P) [DrosMelano7227.FASTAC.txt]
  • (AE003587) CG4428 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG4428-PA [Drosophila melanogaster]gi|16198037|gb|AAL13802.1| LD26292p [Drosophila melanogaster]gi|19920488|ref|NP_608563.1| CG4428-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423. [fly-100309-contam.fasta]
  • Autophagy-specific gene 4 CG4428-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG4428-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD26292p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Autophagy-specific gene 4 OS=Drosophila melanogaster GN=Atg4 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423,FlyMine:FBpp0077618,modMine:FBpp0077618; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Autophagy-specific gene 4 OS=Drosophila melanogaster GN=Atg4 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4a-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423,FlyMine:FBpp0077618,modMine:FBpp0077618; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4a-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423,FlyMine:FBpp0077618,modMine:FBpp0077618; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Autophagy-related 4a, isoform A OS=Drosophila melanogaster GN=Atg4a PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0077618 type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4a-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423,FlyMine:FBpp0077618,modMine:FBpp0077618; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(1081244..1081427,1081578..1081920,1081977..1082056,1082120..1082665,1082789..1082871); ID=FBpp0077618; name=Atg4a-PA; parent=FBgn0031298,FBtr0077953; dbxref=FlyBase:FBpp0077618,FlyBase_Annotation_IDs:CG4428-PA,GB_protein:AAF51423.1,REFSEQ:NP_608563,GB_protein:AAF51423,UniProt/TrEMBL:Q9VPW2,FlyMine:FBpp0077618,modMine:FBpp0077618; MD5=352530b15080a77b2516d4e6e819fd02; length=411; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: cysteine-type endopeptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVGLSDQLA RIMESVFEAY LGPDSVLASA VGQAVGSGEP EDIPRRNTDV WVLGKKYNAI  60
   61 QELELIRRDI QSRLWCTYRH GFSPLGEVQL TTDKGWGCML RCGQMVLAQA LIDLHLGRDW 120
  121 FWTPDCRDAT YLKIVNRFED VRNSFYSIHQ IAQMGESQNK AVGEWLGPNT VAQILKKLVR 180
  181 FDDWSSLAIH VAMDSTVVLD DVYASCREGG SWKPLLLIIP LRLGITDINP LYVPALKRCL 240
  241 ELDSSCGMIG GRPNQALYFL GYVDDEVLYL DPHTTQRTGA VAQKTAAAEQ DYDETYHQKH 300
  301 AARLNFSAMD PSLAVCFLCK TSDSFESLLT KLKEEVLSLC SPALFEISQT RAVDWDTTED 360
  361 IDWPTMPDID WPAGTSDSDS FAIVEESGRD SDAGCSGAIG SGKKPSERAV I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle