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Protein Overview: FBpp0307924, Rpp...

General Information:
Name(s) found: FBpp0307924 [FlyBase]
Rpp30-PA / FBpp0077802 [FlyBase]
Description(s) found:
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  • gi|7296235|gb|AAF51526.1| RNaseP protein p30 [Drosophila melanogaster] [NCBI NR]
  • gi|18447182|gb|AAL68182.1| GH06023p [Drosophila melanogaster] [NCBI NR]
  • gi|17864352|ref|NP_524749.1| RNaseP protein p30 [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2L:complement(251194..251464,251527..251801,251856..251924,251979..252166,252227..252317); ID=FBpp0307924; name=Rpp30-PB; parent=FBgn0022246,FBtr0336990; dbxref=REFSEQ:NP_001259808,GB_protein:AGB92345,FlyBase:FBpp0307924,FlyBase_Annotation_IDs:CG11606-PB; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r5.56; species=Dmel; [FlyBase]
  • The gene RNaseP protein p30 is referred to in FlyBase by the symbol Dmel\Rpp30 (CG11606, FBgn0022246). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:251163..252331. It has the cytological map location 21B5. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: ribonuclease activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: tRNA processing. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG11606-PA translation from_gene[CG11606 Rpp30 FBgn0022246] seq_release:3 mol_weight=33499 cds_boundaries:(2L:251,197..252,317[-]) aa_length:297 transcript_info:[CG11606-RA seq_release:3] gene_info:[gene symbol:Rpp30 FBgn0022246 gene_boundaries:(2L:25 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VPM0) CG11606 protein (GH06023p) [DrosMelano7227.FASTAC.txt]
  • (AE003590) CG11606 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG11606-PA [Drosophila melanogaster]gi|18447182|gb|AAL68182.1| GH06023p [Drosophila melanogaster]gi|17864352|ref|NP_524749.1| CG11606-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(251194..251464,251527..251801,251856..251924,251979..252166,252227..252317); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA, [fly-100309-contam.fasta]
  • CG11606-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH06023p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RNaseP protein p30 CG11606-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(251194..251464,251527..251801,251856..251924,251979..252166,252227..252317); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(251194..251464,251527..251801,251856..251924,251979..252166,252227..252317); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GH06023p OS=Drosophila melanogaster GN=Rpp30 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:complement(251194..251464,251527..251801,251856..251924,251979..252166,252227..252317); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526,FlyMine:FBpp0077802,modMine:FBpp0077802; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • GH06023p OS=Drosophila melanogaster GN=Rpp30 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526,FlyMine:FBpp0077802,modMine:FBpp0077802; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0307924; name=Rpp30-PB; parent=FBgn0022246,FBtr0336990; dbxref=REFSEQ:NP_001259808,GB_protein:AGB92345,FlyBase:FBpp0307924,FlyBase_Annotation_IDs:CG11606-PB; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526,FlyMine:FBpp0077802,modMine:FBpp0077802; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0307924; name=Rpp30-PB; parent=FBgn0022246,FBtr0336990; dbxref=REFSEQ:NP_001259808,GB_protein:AGB92345,FlyBase:FBpp0307924,FlyBase_Annotation_IDs:CG11606-PB; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0077802 type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0022246,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526,FlyMine:FBpp0077802,modMine:FBpp0077802; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0307924 type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0307924; name=Rpp30-PB; parent=FBgn0022246,FBtr0336990; dbxref=REFSEQ:NP_001259808,GB_protein:AGB92345,FlyBase:FBpp0307924,FlyBase_Annotation_IDs:CG11606-PB; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0077802; name=Rpp30-PA; parent=FBgn0283652,FBtr0078143; dbxref=GB_protein:AAF51526.1,FlyBase:FBpp0077802,FlyBase_Annotation_IDs:CG11606-PA,REFSEQ:NP_524749,GB_protein:AAF51526,UniProt/TrEMBL:Q9VPM0,FlyMine:FBpp0077802,modMine:FBpp0077802; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(252227..252317,251979..252166,251856..251924,251527..251801,251194..251464)); ID=FBpp0307924; name=Rpp30-PB; parent=FBgn0283652,FBtr0336990; dbxref=REFSEQ:NP_001259808,GB_protein:AGB92345,FlyBase:FBpp0307924,FlyBase_Annotation_IDs:CG11606-PB,UniProt/TrEMBL:Q9VPM0; MD5=6a1176ca3f6ec858d96696b88d52e6c0; length=297; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: ribonuclease P complex [ISS]
    Biological Process: tRNA processing [IEA][ISS]
    Molecular Function: ribonuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTRPFYDF SIPYNKDDSV LRALLNELVE TGYKTVAIDQ SFDHSKKDPG KRGSEMFPEP  60
   61 HKIEHLRKEF QDKLRILQRI TILYVDVNVA HAMSVSHNLR KFNLIAGQPK TDAALTHCCT 120
  121 AFNGDLITFD PVAGSRLLVN RKAYQVAVRR GMFFEIKYAP SICDSNNRKD MIKIAQNYCT 180
  181 KGKSKNVIFS SGAAHEFQLR GPYDVANLAF IFGLSEDQGK NAVDGHCREL FLKAEARRLG 240
  241 KTIMFLKGNG PIIYSDSSED EKSTEDEMKG LKPQIGKADA FEVKDGTEHA IKRLKVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] PSI-BLAST 16.154902 Hypothetical protein YcdX


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle