YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RpL5-PB, FBpp031...

General Information:
Name(s) found: FBpp0311121 [FlyBase]
FBpp0304879 [FlyBase]
RpL5-PB / FBpp0110424 [FlyBase]
RpL5-PA / FBpp0110421 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|74872851|sp|Q9W5R8.2|RL5_DROME RecName: Full=60S ribosomal protein L5 [NCBI NR]
  • gi|62862580|ref|NP_001015437.1| CG17489-PB.3 [Drosophila melanogaster] [NCBI NR]
  • gi|62862578|ref|NP_001015436.1| CG17489-PA.3 [Drosophila melanogaster] [NCBI NR]
  • gi|30923541|gb|EAA46019.1| ribosomal protein L5, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|30923538|gb|EAA46016.1| ribosomal protein L5, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|17945758|gb|AAL48927.1| RE33114p [Drosophila melanogaster] [NCBI NR]
  • gi|116007384|ref|NP_001036388.1| ribosomal protein L5, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|116007382|ref|NP_001036387.1| ribosomal protein L5, isoform A [Drosophila melanogaster] [NCBI NR]
  • 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2 [Swiss-Prot]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0311121; name=RpL5-PH; parent=FBgn0064225,FBtr0344793; dbxref=FlyBase:FBpp0311121,FlyBase_Annotation_IDs:CG17489-PH; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=REFSEQ:NP_001036390,GB_protein:EAA46017,FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein L5 is referred to in FlyBase by the symbol Dmel\RpL5 (CG17489, FBgn0064225). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:22427533..22429419. It has the cytological map location 40F7. There is experimental evidence that it has the molecular function</span>: protein binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 5 alleles are reported. The phenotype of these alleles is annotated with: chaeta. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG17489-PA translation from_gene[CG17489 yip6 FBgn0040061] seq_release:3 mol_weight=34037 cds_boundaries:(2h:1,260,263..1,261,930[+]) aa_length:299 transcript_info:[CG17489-RA seq_release:3] gene_info:[gene symbol:yip6 FBgn0040061 gene_boundaries:(2h: [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG17489-PB translation from_gene[CG17489 yip6 FBgn0040061] seq_release:3 mol_weight=34037 cds_boundaries:(2h:1,260,263..1,261,930[+]) aa_length:299 transcript_info:[CG17489-RB seq_release:3] gene_info:[gene symbol:yip6 FBgn0040061 gene_boundaries:(2h: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W5R8) RE33114p (CG17489-PA.3) [DrosMelano7227.FASTAC.txt]
  • (AE002910) yip6 gene product [alt 2] [Drosophila melanogaster] [yeastflysequest.fasta]
  • (AE002910) yip6 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG17489-PA.3 [Drosophila melanogaster]gi|30923538|gb|EAA46016.1| CG17489-PB.3 [Drosophila melanogaster]gi|17945758|gb|AAL48927.1| RE33114p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421, [fly-100309-contam.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424, [fly-100309-contam.fasta]
  • Ribosomal protein L5 CG17489-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE33114p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Ribosomal protein L5 CG17489-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG17489-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG17489-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016,FlyMine:FBpp0110424,modMine:FBpp0110424; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(22427601..22427795,22428349..22428786,22428847..22429110,22429269..22429271); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016,FlyMine:FBpp0110424,modMine:FBpp0110424; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0311121; name=RpL5-PH; parent=FBgn0064225,FBtr0344793; dbxref=FlyBase:FBpp0311121,FlyBase_Annotation_IDs:CG17489-PH,GB_protein:EAA46020,REFSEQ:NP_001036391; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=REFSEQ:NP_001036390,GB_protein:EAA46017,FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016,FlyMine:FBpp0110424,modMine:FBpp0110424; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0311121; name=RpL5-PH; parent=FBgn0064225,FBtr0344793; dbxref=FlyBase:FBpp0311121,FlyBase_Annotation_IDs:CG17489-PH,GB_protein:EAA46020,REFSEQ:NP_001036391; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=REFSEQ:NP_001036390,GB_protein:EAA46017,FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9W5R8, Ribosomal protein L5, isoform G OS=Drosophila melanogaster GN=RpL5 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0110421 type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0110424 type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016,FlyMine:FBpp0110424,modMine:FBpp0110424; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0311121 type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0311121; name=RpL5-PH; parent=FBgn0064225,FBtr0344793; dbxref=FlyBase:FBpp0311121,FlyBase_Annotation_IDs:CG17489-PH,GB_protein:EAA46020,REFSEQ:NP_001036391; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304879 type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=REFSEQ:NP_001036390,GB_protein:EAA46017,FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110421; name=RpL5-PA; parent=FBgn0064225,FBtr0111129; dbxref=FlyBase_Annotation_IDs:CG17489-PA,GB_protein:EAA46019.1,FlyBase:FBpp0110421,REFSEQ:NP_001036387,GB_protein:EAA46019,UniProt/Swiss-Prot:Q9W5R8; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0110424; name=RpL5-PB; parent=FBgn0064225,FBtr0111132; dbxref=FlyBase_Annotation_IDs:CG17489-PB,GB_protein:EAA46016.1,FlyBase:FBpp0110424,REFSEQ:NP_001036388,GB_protein:EAA46016,UniProt/Swiss-Prot:Q9W5R8,FlyMine:FBpp0110424,modMine:FBpp0110424; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0311121; name=RpL5-PH; parent=FBgn0064225,FBtr0344793; dbxref=FlyBase:FBpp0311121,FlyBase_Annotation_IDs:CG17489-PH,GB_protein:EAA46020,REFSEQ:NP_001036391,UniProt/Swiss-Prot:Q9W5R8; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(22536537..22536539,22536115..22536378,22535617..22536054,22534869..22535063)); ID=FBpp0304879; name=RpL5-PG; parent=FBgn0064225,FBtr0332633; dbxref=REFSEQ:NP_001036390,GB_protein:EAA46017,FlyBase:FBpp0304879,FlyBase_Annotation_IDs:CG17489-PG,UniProt/Swiss-Prot:Q9W5R8; MD5=4509e147e248f30dbcb4ce925dd687bb; length=299; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: cytosolic large ribosomal subunit [ISS][NAS]
    Biological Process: translation [IEA][ISS]
    Molecular Function: protein binding [IPI]
    structural constituent of ribosome [IEA][ISS][NAS]
    5S rRNA binding [IEA][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFVKVVKNK QYFKRYQVKF RRRREGKTDY YARKRLTFQD KNKYNTPKYR LIVRLSNKDI  60
   61 TVQIAYARIE GDRVVCAAYS HELPKYGIQV GLTNYAAAYC TGLLVARRVL NKLGLDSLYA 120
  121 GCTEVTGEEF NVEPVDDGPG AFRCFLDVGL ARTTTGARVF GAMKGAVDGG LNIPHSVKRF 180
  181 PGYSAETKSF NADVHRAHIF GQHVADYMRS LEEEDEESFK RQFSRYIKLG IRADDLEDIY 240
  241 KKAHQAIRND PTHKVTAKKS SAVTKKRWNA KKLTNEQRKT KIAAHKAAYV AKLQSETEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..299] PSI-BLAST 92.69897 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle