YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL5-PB, FBpp031...
Organism:	Drosophila melanogaster
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL5-PB, FBpp031....

Description	E-value	Query Range	Subject Range
gi\|114557920 - gi\|114557920\|ref\|XP_513564.2\| PREDICTED: similar to MSTP030 [Pan troglodytes]	504.0	[0..2]	[299..111]
gi\|41350988, gi\|... - gi\|41350988\|gb\|AAH65687.1\| Ribosomal protein L5a [Danio rerio], gi\|41054305\|ref\|NP_956050.1\| ribosom...	500.0	[0..1]	[298..1]
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2	495.0	[0..1]	[299..1]
gi\|112907480 - gi\|112907480\|gb\|ABI26260.1\| ribosomal protein L5 [Dicentrarchus labrax]	491.0	[0..1]	[297..1]
gi\|148227306, gi... - gi\|27371036\|gb\|AAH41227.1\| Rpl5-a protein [Xenopus laevis], gi\|148227306\|ref\|NP_001079377.1\| similar...	491.0	[0..1]	[297..1]
gi\|45360909, gi\|... - gi\|45360909\|ref\|NP_988881.1\| ribosomal protein L5 [Xenopus (Silurana) tropicalis], gi\|37590427\|gb\|AA...	490.0	[0..1]	[297..1]
gi\|15293873 - gi\|15293873\|gb\|AAK95129.1\|AF401557_1 ribosomal protein L5b [Ictalurus punctatus]	490.0	[0..1]	[298..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFVKVVKNK QYFKRYQVKF RRRREGKTDY YARKRLTFQD KNKYNTPKYR LIVRLSNKDI  60
   61 TVQIAYARIE GDRVVCAAYS HELPKYGIQV GLTNYAAAYC TGLLVARRVL NKLGLDSLYA 120
  121 GCTEVTGEEF NVEPVDDGPG AFRCFLDVGL ARTTTGARVF GAMKGAVDGG LNIPHSVKRF 180
  181 PGYSAETKSF NADVHRAHIF GQHVADYMRS LEEEDEESFK RQFSRYIKLG IRADDLEDIY 240
  241 KKAHQAIRND PTHKVTAKKS SAVTKKRWNA KKLTNEQRKT KIAAHKAAYV AKLQSETEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1s1iE
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits