Protein Overview: RS28_RAT

General Information:
Name(s) found:	RS28_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	pir\|\|R3RT28 ribosomal protein S28, cytosolic [validated] - rat [NCBI NR] gi\|51338623\|sp\|P62859.1\|RS28_RAT RecName: Full=40S ribosomal protein S28 [NCBI NR] gi\|157787127\|ref\|NP_001099200.1\| ribosomal protein S28 [Rattus norvegicus] [NCBI NR] gi\|149031655\|gb\|EDL86618.1\| rCG37553 [Rattus norvegicus] [NCBI NR] gi\|109504387\|ref\|XP_001071778.1\| PREDICTED: similar to 40S ribosomal protein S28 [Rattus norvegicus] [NCBI NR] gi\|109503516\|ref\|XP_001060434.1\| PREDICTED: similar to 40S ribosomal protein S28 [Rattus norvegicus] [NCBI NR] gi\|109481715\|ref\|XP_001079210.1\| PREDICTED: similar to 40S ribosomal protein S28 [Rattus norvegicus] [NCBI NR] gi\|109480345\|ref\|XP_344538.3\| PREDICTED: similar to 40S ribosomal protein S28 [Rattus norvegicus] [NCBI NR] 40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1 [Swiss-Prot] Ensembl_locations(Chr-bp):16-67283461 40S ribosomal protein S28 [hmr_yeast5_DM3-1_pombe.fasta] ribosomal protein S28 [Mus musculus]gi\|4506715\|ref\|NP_001022.1\| ribosomal protein S28 [Homo sapiens]gi\|48597082\|ref\|NP_001001587.1\| 40S ribosomal protein S28 [Sus scrofa]gi\|47683011\|gb\|AAH70218.1\| Ribosomal protein S28 [Homo sapiens]gi\|47682773\|gb\|AAH [nrdb_11152004_Chlamydomonas] 40S ribosomal protein S28 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] ribosomal protein S28 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] rCG37553 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] PREDICTED: similar to 40S ribosomal protein S28 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Rps28 40S ribosomal protein S28 [rat-ipi-250309-contam.fasta] 40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	69 amino acids
Gene Ontology:
Cellular Component:	cytosolic small ribosomal subunit [IDA] ribosome [IEA] intracellular [IEA]
Biological Process:	translation [IEA]
Molecular Function:	RNA binding [TAS] structural constituent of ribosome [IEA]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MDTSRVQPIK LARVTKVLGR TGSQGQCTQV RVEFMDDTSR SIIRNVKGPV REGDVLTLLE 60 61 SEREARRLR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..69]	PSI-BLAST	17.69897	Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle