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Protein Overview: RPAB2_RAT

General Information:
Name(s) found: RPAB2_RAT [Swiss-Prot]
Description(s) found:
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  • gi|8134658|sp|O88828.1|RPAB2_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit RPABC2; Short=RNA polymerases I, II, and III subunit ABC2; AltName: Full=DNA-directed RNA polymerase II subunit F; AltName: Full=RPB6 [NCBI NR]
  • gi|53733956|gb|AAH83552.1| Polymerase (RNA) II (DNA directed) polypeptide F [Rattus norvegicus] [NCBI NR]
  • gi|3650216|dbj|BAA33414.1| RNA polymerase II [Rattus norvegicus] [NCBI NR]
  • gi|149065948|gb|EDM15821.1| polymerase (RNA) II (DNA directed) polypeptide F [Rattus norvegicus] [NCBI NR]
  • gi|13786166|ref|NP_112625.1| polymerase II [Rattus norvegicus] [NCBI NR]
  • DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) - Rattus norvegicus (Rat) [Swiss-Prot]
  • DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):7-107032574 DNA-directed RNA polymerase II 14.4 kDa polypeptide [hmr_yeast5_DM3-1_pombe.fasta]
  • polymerase II [HMR_022704-rand.fasta]
  • 1810060D16Rik protein [Mus musculus]gi|53733956|gb|AAH83552.1| Polymerase II [Rattus norvegicus]gi|13786166|ref|NP_112625.1| polymerase II [Rattus norvegicus]gi|20902795|ref|XP_128110.1| RIKEN cDNA 1810060D16 [Mus musculus]gi|47117076|sp|P61219|RPB6_M [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_031335) polymerase II [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • DNA-directed RNA polymerases I, II, and III subunit RPABC2 (RNA polymerases I, II, and III subunit ABC2) (DNA-directed RNA polymerase II subunit F) (RPB6) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • polymerase II [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • polymerase (RNA) II (DNA directed) polypeptide F [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Polymerase (RNA) II (DNA directed) polypeptide F [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • RNA polymerase II [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.4 KDA POLYPEPTIDE [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide (RPB6) (RPABC14.4) (RPB14.4) [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Polr2f DNA-directed RNA polymerases I, II, and III subunit RPABC2 [rat-ipi-250309-contam.fasta]
  • DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 127 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][ISS]
    DNA-directed RNA polymerase I complex [TAS]
    RNA polymerase complex [IEA]
    nucleolus [UNKNOWN]
    DNA-directed RNA polymerase III complex [TAS]
    nucleoplasm [UNKNOWN]
    DNA-directed RNA polymerase II, core complex [UNKNOWN][ISS][TAS]
    Biological Process: RNA splicing [UNKNOWN]
    transcription from RNA polymerase III promoter [TAS]
    transcription from RNA polymerase I promoter [TAS]
    transcription from RNA polymerase II promoter [UNKNOWN][ISS][TAS]
    transcription initiation from RNA polymerase II promoter [UNKNOWN]
    RNA elongation from RNA polymerase II promoter [UNKNOWN]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [UNKNOWN][TAS]
    protein kinase activity [UNKNOWN][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNEDNFDG DDFDDVEEDE GLDDLENAEE EGQENVEILP SGERPQANQK RITTPYMTKY  60
   61 ERARVLGTRA LQIAMCAPVM VELEGETDPL LIAMKELKAR KIPIIIRRYL PDGSYEDWGV 120
  121 DELIISD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 39.0 RPB6

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.372436499192166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle