Protein Overview: gi|109504379, gi...

General Information:
Name(s) found:	gi\|157820263 [NCBI NR] gi\|149057826 [NCBI NR] gi\|109504379 [NCBI NR] gi\|109503508 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|157820263\|ref\|NP_001102346.1\| LSM1 homolog, U6 small nuclear RNA associated [Rattus norvegicus] [NCBI NR] gi\|149057826\|gb\|EDM09069.1\| LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) [Rattus norvegicus] [NCBI NR] gi\|109504379\|ref\|XP_001071427.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like) [Rattus norvegicus] [NCBI NR] gi\|109503508\|ref\|XP_344537.3\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like) [Rattus norvegicus] [NCBI NR] Ensembl_locations(Chr-bp):16-66751072 [hmr_yeast5_DM3-1_pombe.fasta] Tax_Id=10116 PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] LSM1 homolog, U6 small nuclear RNA associated [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (predicted) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like) [Rattus norvegicus] [nr-271106-contam.fasta] Tax_Id=10116 Gene_Symbol=Lsm1 LSM1 homolog, U6 small nuclear RNA associated [rat-ipi-250309-contam.fasta] LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (Predicted) OS=Rattus norvegicus GN=Lsm1 [011711_HMR.fasta] LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (Predicted) OS=Rattus norvegicus GN=Lsm1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
Organism:	Rattus norvegicus
Length:	133 amino acids
Gene Ontology:
Cellular Component:	nucleus [UNKNOWN] cytoplasm [UNKNOWN]
Biological Process:	histone mRNA catabolic process [UNKNOWN]
Molecular Function:	protein binding [UNKNOWN]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MNYMPGTASL IEDIDKKHLV LLRDGRTLIG FLRSIDQFAN LVLHQTVERI HVGRKYGDIP 60 61 RGIFVVRGEN VVLLGEIDLE KESDTPLQQV SIEEILEEQR VEQQSRLEAE KLKVQALKDR 120 121 GLSIPRADTL DEY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle