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Protein Overview: gi|157818019, gi...

General Information:
Name(s) found: gi|157818019 [NCBI NR]
gi|149053807 [NCBI NR]
gi|109491608 [NCBI NR]
gi|109488756 [NCBI NR]
Description(s) found:
Found 16 descriptions.
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  • gi|157818019|ref|NP_001103022.1| splicing factor, arginine/serine-rich 1 [Rattus norvegicus] [NCBI NR]
  • gi|149053807|gb|EDM05624.1| rCG34610, isoform CRA_c [Rattus norvegicus] [NCBI NR]
  • gi|109491608|ref|XP_001081187.1| PREDICTED: similar to splicing factor, arginine/serine-rich 1 (ASF/SF2) [Rattus norvegicus] [NCBI NR]
  • gi|109488756|ref|XP_001072402.1| PREDICTED: similar to splicing factor, arginine/serine-rich 1 (ASF/SF2) [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    in utero embryonic development [UNKNOWN]
    cardiac muscle contraction [UNKNOWN]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    protein binding [UNKNOWN]
    RS domain binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGVIRGP AGNNDCRIYV GNLPPDIRTK DIEDVFYKYG AIRDIDLKNR RGGPPFAFVE  60
   61 FEDPRDAEDA VYGRDGYDYD GYRLRVEFPR SGRGTGRGGG GGGGGGAPRG RYGPPSRRSE 120
  121 NRVVVSGLPP SGSWQDLKDH MREAGDVCYA DVYRDGTGVV EFVRKEDMTY AVRKLDNTKF 180
  181 RSHEGETAYI RVKVDGPRSP SYGRSRSRSR SRSRSRSRSN SRSRSYSPRR SRGSPRYSPR 240
  241 HSRSRSRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 13.30103 Solution structure of RRM domain in splicing factor SF2
    2 View Details [113..248] PSI-BLAST 5.09691 Solution structure of RRM domain in splicing factor 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.20292754034443 bayes_pls_golite062009
  • binding
    		•  2.15650498181278 bayes_pls_golite062009
    		• 0.84389121154917 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • protein binding
    		•  0.611064526250178 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.40943492051131 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.20292754034443 bayes_pls_golite062009
  • binding
    		•  2.15650498181278 bayes_pls_golite062009
    		• 0.84389121154917 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • protein binding
    		•  0.611064526250178 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.40943492051131 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle