YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157818019, gi...
Organism:	Rattus norvegicus
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157818019, gi....

Description	E-value	Query Range	Subject Range
gi\|73976781 - gi\|73976781\|ref\|XP_857374.1\| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...	1.0E-37	[6..243]	[181..427]
gi\|76689285 - gi\|76689285\|ref\|XP_881509.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...	2.0E-37	[6..243]	[181..425]
gi\|125602953, gi... - gi\|34015145\|gb\|AAQ56342.1\| putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]... gi\|125561054 - gi\|125561054\|gb\|EAZ06502.1\| hypothetical protein OsI_28747 [Oryza sativa Indica Group]	4.0E-37	[6..239]	[208..448]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGVIRGP AGNNDCRIYV GNLPPDIRTK DIEDVFYKYG AIRDIDLKNR RGGPPFAFVE  60
   61 FEDPRDAEDA VYGRDGYDYD GYRLRVEFPR SGRGTGRGGG GGGGGGAPRG RY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.30103
Match:	1x4aA
Description:	Solution structure of RRM domain in splicing factor SF2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.75748736237159	bayes_pls_golite062009
mRNA binding	2.67679675039933	bayes_pls_golite062009
nucleic acid binding	2.20292754034443	bayes_pls_golite062009
binding	2.15650498181278	bayes_pls_golite062009
	0.84389121154917	bayes_pls_golite062009
single-stranded RNA binding	0.61170301639809	bayes_pls_golite062009
protein binding	0.611064526250178	bayes_pls_golite062009
poly-pyrimidine tract binding	0.40943492051131	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [113-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPPSRRSENR VVVSGLPPSG SWQDLKDHMR EAGDVCYADV YRDGTGVVEF VRKEDMTYAV  60
   61 RKLDNTKFRS HEGETAYIRV KVDGPRSPSY GRSRSRSRSR SRSRSRSNSR SRSYSPRRSR 120
  121 GSPRYSPRHS RSRSRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.09691
Match:	1x4cA
Description:	Solution structure of RRM domain in splicing factor 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	3.75748736237159	bayes_pls_golite062009
mRNA binding	2.67679675039933	bayes_pls_golite062009
nucleic acid binding	2.20292754034443	bayes_pls_golite062009
binding	2.15650498181278	bayes_pls_golite062009
	0.84389121154917	bayes_pls_golite062009
single-stranded RNA binding	0.61170301639809	bayes_pls_golite062009
protein binding	0.611064526250178	bayes_pls_golite062009
poly-pyrimidine tract binding	0.40943492051131	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: