Protein Overview: CO2A1_RAT

General Information:
Name(s) found:	CO2A1_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|83301579\|sp\|P05539.2\|CO2A1_RAT RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Contains: RecName: Full=Chondrocalcin; Flags: Precursor [NCBI NR] gi\|6978677\|ref\|NP_037061.1\| collagen, type II, alpha 1 [Rattus norvegicus] [NCBI NR] gi\|1032389\|gb\|AAA79780.1\| collagen alpha 1 type II [NCBI NR] Collagen alpha-1(II) chain OS=Rattus norvegicus GN=Col2a1 PE=1 SV=2 [Swiss-Prot] Ensembl_locations(Chr-bp):7-126920068 Collagen alpha 1 type II [hmr_yeast5_DM3-1_pombe.fasta] procollagen, type II, alpha 1; Procollagen II alpha 1 [HMR_022704-rand.fasta] procollagen, type II, alpha 1 [Rattus norvegicus]gi\|1032389\|gb\|AAA79780.1\| collagen alpha 1 type II [nrdb_11152004_Chlamydomonas] (NM_012929) procollagen II alpha 1 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] Tax_Id=10116 Collagen alpha 1 type II [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta] Tax_Id=10116 Ensembl_locations(Chr-bp):7-126920068 Collagen alpha 1 type II [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta] collagen, type II, alpha 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Collagen alpha-1(II) chain precursor (Alpha-1 type II collagen) [Contains: Chondrocalcin] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] collagen alpha 1 type II [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 COLLAGEN ALPHA 1 TYPE II [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Collagen alpha-1(II) chain precursor [Contains: Chondrocalcin] [nr-271106-contam.fasta] procollagen, type II, alpha 1 [Rattus norvegicus] [nr-271106-contam.fasta] Collagen alpha-1(II) chain OS=Rattus norvegicus GN=Col2a1 [011711_HMR.fasta] Collagen alpha-1(II) chain OS=Rattus norvegicus GN=Col2a1 PE=2 SV=2 [UNIPROT_RAT_07-21-2011_reversed.fasta]
Organism:	Rattus norvegicus
Length:	1419 amino acids
Gene Ontology:
Cellular Component:	basement membrane [UNKNOWN] extracellular space [UNKNOWN] cytoplasm [UNKNOWN] collagen [UNKNOWN][IEA] collagen type II [UNKNOWN][TAS] extracellular matrix [UNKNOWN] extracellular region [UNKNOWN][IEA]
Biological Process:	inner ear development [UNKNOWN] embryonic skeletal joint morphogenesis [UNKNOWN] palate development [UNKNOWN] cartilage development involved in endochondral bone morphogenesis [UNKNOWN] chondrocyte differentiation [UNKNOWN] visual perception [UNKNOWN] proteoglycan metabolic process [UNKNOWN] skeletal system morphogenesis [UNKNOWN] bone development [UNKNOWN] tissue homeostasis [UNKNOWN] sensory perception of sound [UNKNOWN] heart morphogenesis [UNKNOWN] skeletal system development [UNKNOWN] cartilage condensation [UNKNOWN] negative regulation of apoptosis [UNKNOWN] inner ear morphogenesis [UNKNOWN] regulation of gene expression [UNKNOWN] endochondral ossification [UNKNOWN] limb morphogenesis [UNKNOWN] collagen fibril organization [UNKNOWN] cartilage development [UNKNOWN][IEP]
Molecular Function:	extracellular matrix structural constituent [IEA][TAS] platelet-derived growth factor binding [UNKNOWN]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLGAPQSL VLLTLLIATV LQCQGQDARK LGPKGQKGEP GDIKDIIGPK GPPGPQGPAG  60
   61 EQGPRGDRGD KGERGAPGPR GRDGEPGTPG NPGPPGPPGP PGPPGLGGGN FAAQMAGGFD 120
  121 EKAGGAQMGV MQGPMGPMGP RGPPGPAGAP GPQGFQGNPG EPGEPGVSGP IGPRGPPGPA 180
  181 GKPGDDGEAG KPGKAGERGL PGPQGARGFP GTPGLPGVKG HRGYPGLDGA KGEAGAPGVK 240
  241 GESGSPGENG SPGPMGPRGL PGERGRTGPA GAAGARGNDG QPGPAGPPGP VGPAGGPGFL 300
  301 GAPGAKGEAG PTGARGPEGA QGSRGEPGNP GSPGPAGASG NPGTDGIPGA KGSAGAPGIA 360
  361 GAPGFPGPRG PPGPQGATGP LGPKGQTGEP GIAGFKGEQG PKGETGPAGP QGAPGPAGEE 420
  421 GKRGARGEPG GAGPIGPPGE RGAPGNRGFP GQDGLAGPKG APGERGPSGL AGPKGANGDP 480
  481 GRPGEPGLPG ARGLTGRPGD AGPQGKVGPS GAPGEDGRPG PPGPQGARGQ PGVMGFPGPK 540
  541 GANGEPGKAG EKGLAGAPGL RGLPGKDGET GAAGPPGPSG PAGERGEQGA PGPSGFQGLP 600
  601 GPPGPPGEGG KQGDQGIPGE AGAPGLVGPR GERGFPGERG SPGAQGLQGP RGLPGTPGTD 660
  661 GPKGAAGPDG PPGAQGPPGL QGMPGERGAA GIAGPKGDRG DVGEKGPEGA PGKDGGRGLT 720
  721 GPIGPPGPAG ANGEKGEVGP PGPSGSTGAR GAPGERGETG PPGPAGFAGP PGADGQPGAK 780
  781 GDQGEAGQKG DAGAPGPQGP SGAPGPQGPT GVTGPKGARG AQGPPGATGF PGAAGRVGPP 840
  841 GSNGNPGPAG PPGPAGKDGP KGARGDTGAP GRAGDPGLQG PAGAPGEKGE PGDDGPSGSD 900
  901 GPPGPQGLAG QRGIVGLPGQ RGERGFPGLP GPSGEPGKQG APGASGDRGP PGPVGPPGLT 960
  961 GPAGEPGREG SPGADGPPGR DGAAGVKGDR GETGALGAPG APGPPGSPGP AGPTGKQGDR1020
 1021 GEAGAQGPMG PSGPAGARGI AGPQGPRGDK GEAGEPGERG LKGHRGFTGL QGLPGPPGPS1080
 1081 GDQGTSGPAG PSGPRGPPGP VGPSGKDGSN GIPGPIGPPG PRGRSGETGP AGPPGNPGPP1140
 1141 GPPGPPGPGI DMSAFAGLGQ REKGPDPLQY MRADEADSTL RQHDVEVDAT LKSLNNQIES1200
 1201 IRSPDGSRKN PARTCQDLKL CHPEWKSGDY WIDPNQGCTL DAMKVFCNME TGESCVYPNP1260
 1261 ATVPRKNWWS SKSKEKKHIW FGETMNGGFH FSYGDGNLAP NTANVQMTFL RLLSTEGSQN1320
 1321 ITYHCKNSIA YLDEAAGNLK KALLIQGSND VEMRAEGNSR FTYTALKDGC TKHTGKWGKT1380
 1381 IIEYRSQKTS RLPIVDIAPM DIGGPDQEFG VDIGPVCFL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein Overview: CO2A1_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: