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Protein Overview: RL27_RAT

General Information:
Name(s) found: RL27_RAT [Swiss-Prot]
Description(s) found:
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  • pir||R5RT27 ribosomal protein L27, cytosolic [validated] - rat [NCBI NR]
  • gi|60688496|gb|AAH91566.1| Ribosomal protein L27 [Rattus norvegicus] [NCBI NR]
  • gi|57694|emb|CAA30313.1| unnamed protein product [Rattus norvegicus] [NCBI NR]
  • gi|47117737|sp|P61354.2|RL27_RAT RecName: Full=60S ribosomal protein L27 [NCBI NR]
  • gi|37231599|gb|AAH58474.1| Ribosomal protein L27 [Rattus norvegicus] [NCBI NR]
  • gi|149054310|gb|EDM06127.1| rCG35185, isoform CRA_b [Rattus norvegicus] [NCBI NR]
  • gi|149054307|gb|EDM06124.1| rCG35185, isoform CRA_b [Rattus norvegicus] [NCBI NR]
  • gi|11968094|ref|NP_071959.1| ribosomal protein L27 [Rattus norvegicus] [NCBI NR]
  • 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):10-88635335 ribosomal protein L27 [hmr_yeast5_DM3-1_pombe.fasta]
  • ribosomal protein L27 [HMR_022704-rand.fasta]
  • PREDICTED: similar to ribosomal protein L27 [Pan troglodytes]gi|8567400|ref|NP_035419.1| ribosomal protein L27 [Mus musculus]gi|4506623|ref|NP_000979.1| ribosomal protein L27 [Homo sapiens]gi|11968094|ref|NP_071959.1| ribosomal protein L27 [Rattus norv [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Ribosomal protein L27 [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta]
  • (NM_022514) ribosomal protein L27 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Tax_Id=10116 Ensembl_locations(Chr-bp):10-88635335 ribosomal protein L27 [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta]
  • 60S ribosomal protein L27 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein L27 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG35185, isoform CRA_b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein L27 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 RIBOSOMAL PROTEIN L27 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rpl27 60S ribosomal protein L27 [rat-ipi-250309-contam.fasta]
  • 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [UNKNOWN]
    cytosol [UNKNOWN]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translational elongation [UNKNOWN]
    translation [IEA]
    Molecular Function: structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFMKPGKV VLVLAGRYSG RKAVIVKNID DGTSDRPYSH ALVAGIDRYP RKVTAAMGKK  60
   61 KIAKRSKIKS FVKVYNYNHL MPTRYSVDIP LDKTVVNKDV FRDPALKRKA RREAKVKFEE 120
  121 RYKTGKNKWF FQKLRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] FFAS03 3.09 No description for 2joyA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.33175622373475 bayes_pls_golite062009
  • structural molecule activity
    		•  8.78104488316498 bayes_pls_golite062009
  • translation elongation factor activity
    		•  2.67300686401704 bayes_pls_golite062009
  • binding
    		•  1.53082494948413 bayes_pls_golite062009
  • RNA binding
    		•  1.34286989242843 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.34250569976274 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.24801565562229 bayes_pls_golite062009
  • DNA binding
    		•  0.817602006068725 bayes_pls_golite062009
  • protein binding
    		•  0.247509245072821 bayes_pls_golite062009
  • transcription factor activity
    		•  0.151888933180377 bayes_pls_golite062009
  • translation regulator activity
    		•  0.084754562593104 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.0564075582229911 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle