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Protein Overview: COL6A2

General Information:
Name(s) found: COL6A2 [HGNC (HUGO)]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • collagen, type VI, alpha 2 [HGNC (HUGO)]
    • Organism: Homo sapiens
    Length: 1019 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQGTCSVLL LWGILGAIQA QQQEVISPDT TERNNNCPEK TDCPIHVYFV LDTSESVTMQ  60
   61 SPTDILLFHM KQFVPQFISQ LQNEFYLDQV ALSWRYGGLH FSDQVEVFSP PGSDRASFIK 120
  121 NLQGISSFRR GTFTDCALAN MTEQIRQDRS KGTVHFAVVI TDGHVTGSPC GGIKLQAERA 180
  181 REEGIRLFAV APNQNLKEQG LRDIASTPHE LYRNDYATML PDSTEIDQDT INRIIKVMKH 240
  241 EAYGECYKVS CLEIPGPSGP KGYRGQKGAK GNMGEPGEPG QKGRQGDPGI EGPIGFPGPK 300
  301 GVPGFKGEKG EFGADGRKGA PGLAGKNGTD GQKGKLGRIG PPGCKGDPGN RGPDGYPGEA 360
  361 GSPGERGDQG GKGDPGRPGR RGPPGEIGAK GSKGYQGNSG APGSPGVKGA KGGPGPRGPK 420
  421 GEPGRRGDPG TKGSPGSDGP KGEKGDPGPE GPRGLAGEVG NKGAKGDRGL PGPRGPQGAL 480
  481 GEPGKQGSRG DPGDAGPRGD SGQPGPKGDP GRPGFSYPGP RGAPGEKGEP GPRGPEGGRG 540
  541 DFGLKGEPGR KGEKGEPADP GPPGEPGPRG PRGVPGPEGE PGPPGDPGLT ECDVMTYVRE 600
  601 TCGCCDCEKR CGALDVVFVI DSSESIGYTN FTLEKNFVIN VVNRLGAIAK DPKSETGTRV 660
  661 GVVQYSHEGT FEAIQLDDER IDSLSSFKEA VKNLEWIAGG TWTPSALKFA YDRLIKESRR 720
  721 QKTRVFAVVI TDGRHDPRDD DLNLRALCDR DVTVTAIGIG DMFHEKHESE NLYSIACDKP 780
  781 QQVRNMTLFS DLVAEKFIDD MEDVLCPDPQ IVCPDLPCQT ELSVAQCTQR PVDIVFLLDG 840
  841 SERLGEQNFH KARRFVEQVA RRLTLARRDD DPLNARVALL QFGGPGEQQV AFPLSHNLTA 900
  901 IHEALETTQY LNSFSHVGAG VVHAINAIVR SPRGGARRHA ELSFVFLTDG VTGNDSLHES 960
  961 AHSMRKQNVV PTVLALGSDV DMDVLTTLSL GDRAAVFHEK DYDSLAQPGF FDRFIRWIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..609] PSI-BLAST 57.39794 No description for 1y0fB was found.
    2 View Details [610..820] PSI-BLAST 60.0 The mouse von Willebrand Factor A1-botrocetin complex
    3 View Details [821..1019] PSI-BLAST 43.39794 I-DOMAIN FROM INTEGRIN CR3, MN2+ BOUND

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • extracellular matrix structural constituent
    		•  5.35512843823459 bayes_pls_golite062009
  • collagen binding
    		•  3.02661336895748 bayes_pls_golite062009
  • integrin binding
    		•  2.88072615891929 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  2.82246206393797 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  1.99205622721239 bayes_pls_golite062009
  • binding
    		•  1.97047580255231 bayes_pls_golite062009
  • protein binding
    		•  1.74050731797598 bayes_pls_golite062009
  • glycoprotein binding
    		•  1.69506686059649 bayes_pls_golite062009
  • receptor binding
    		•  1.45722320869741 bayes_pls_golite062009
  • protein complex binding
    		•  1.225591377849 bayes_pls_golite062009
  • extracellular matrix structural constituent conferring tensile strength
    		•  0.711915074769859 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.70256601942196 bayes_pls_golite062009
  • pattern binding
    		•  0.376098362886939 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.292637914469249 bayes_pls_golite062009
  • heparan sulfate proteoglycan binding
    		•  0.148637005031519 bayes_pls_golite062009
  • heparin binding
    		•  0.0972358234583903 bayes_pls_golite062009
  • protease binding
    		•  0.0133712327786606 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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