| Protein: | COL6A2 |
| Organism: | Homo sapiens |
| Length: | 1019 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COL6A2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1019] | [1..1019] |
|
|
0.0 | [1..1019] | [1..1019] |
|
|
0.0 | [1..1019] | [8..1022] |
|
|
0.0 | [1..1019] | [7..1027] |
|
|
0.0 | [1..1019] | [6..1034] |
|
|
0.0 | [1..1019] | [158..1159] |
|
Region A: Residues: [1-609] |
1 11 21 31 41 51
| | | | | |
1 MLQGTCSVLL LWGILGAIQA QQQEVISPDT TERNNNCPEK TDCPIHVYFV LDTSESVTMQ 60
61 SPTDILLFHM KQFVPQFISQ LQNEFYLDQV ALSWRYGGLH FSDQVEVFSP PGSDRASFIK 120
121 NLQGISSFRR GTFTDCALAN MTEQIRQDRS KGTVHFAVVI TDGHVTGSPC GGIKLQAERA 180
181 REEGIRLFAV APNQNLKEQG LRDIASTPHE LYRNDYATML PDSTEIDQDT INRIIKVMKH 240
241 EAYGECYKVS CLEIPGPSGP KGYRGQKGAK GNMGEPGEPG QKGRQGDPGI EGPIGFPGPK 300
301 GVPGFKGEKG EFGADGRKGA PGLAGKNGTD GQKGKLGRIG PPGCKGDPGN RGPDGYPGEA 360
361 GSPGERGDQG GKGDPGRPGR RGPPGEIGAK GSKGYQGNSG APGSPGVKGA KGGPGPRGPK 420
421 GEPGRRGDPG TKGSPGSDGP KGEKGDPGPE GPRGLAGEVG NKGAKGDRGL PGPRGPQGAL 480
481 GEPGKQGSRG DPGDAGPRGD SGQPGPKGDP GRPGFSYPGP RGAPGEKGEP GPRGPEGGRG 540
541 DFGLKGEPGR KGEKGEPADP GPPGEPGPRG PRGVPGPEGE PGPPGDPGLT ECDVMTYVRE 600
601 TCGCCDCEK
|
| Detection Method: |  |
| Confidence: | 57.39794 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [610-820] |
1 11 21 31 41 51
| | | | | |
1 RCGALDVVFV IDSSESIGYT NFTLEKNFVI NVVNRLGAIA KDPKSETGTR VGVVQYSHEG 60
61 TFEAIQLDDE RIDSLSSFKE AVKNLEWIAG GTWTPSALKF AYDRLIKESR RQKTRVFAVV 120
121 ITDGRHDPRD DDLNLRALCD RDVTVTAIGI GDMFHEKHES ENLYSIACDK PQQVRNMTLF 180
181 SDLVAEKFID DMEDVLCPDP QIVCPDLPCQ T
|
| Detection Method: | |
| Confidence: | 60.0 |
| Match: | 1u0oC |
| Description: | The mouse von Willebrand Factor A1-botrocetin complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [821-1019] |
1 11 21 31 41 51
| | | | | |
1 ELSVAQCTQR PVDIVFLLDG SERLGEQNFH KARRFVEQVA RRLTLARRDD DPLNARVALL 60
61 QFGGPGEQQV AFPLSHNLTA IHEALETTQY LNSFSHVGAG VVHAINAIVR SPRGGARRHA 120
121 ELSFVFLTDG VTGNDSLHES AHSMRKQNVV PTVLALGSDV DMDVLTTLSL GDRAAVFHEK 180
181 DYDSLAQPGF FDRFIRWIC
|
| Detection Method: | |
| Confidence: | 43.39794 |
| Match: | 1jlmA |
| Description: | I-DOMAIN FROM INTEGRIN CR3, MN2+ BOUND |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| extracellular matrix structural constituent | 5.35512843823459 | bayes_pls_golite062009 |
| collagen binding | 3.02661336895748 | bayes_pls_golite062009 |
| integrin binding | 2.88072615891929 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.82246206393797 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.99205622721239 | bayes_pls_golite062009 |
| binding | 1.97047580255231 | bayes_pls_golite062009 |
| protein binding | 1.74050731797598 | bayes_pls_golite062009 |
| glycoprotein binding | 1.69506686059649 | bayes_pls_golite062009 |
| receptor binding | 1.45722320869741 | bayes_pls_golite062009 |
| protein complex binding | 1.225591377849 | bayes_pls_golite062009 |
| extracellular matrix structural constituent conferring tensile strength | 0.711915074769859 | bayes_pls_golite062009 |
| carbohydrate binding | 0.70256601942196 | bayes_pls_golite062009 |
| pattern binding | 0.376098362886939 | bayes_pls_golite062009 |
| polysaccharide binding | 0.292637914469249 | bayes_pls_golite062009 |
| heparan sulfate proteoglycan binding | 0.148637005031519 | bayes_pls_golite062009 |
| heparin binding | 0.0972358234583903 | bayes_pls_golite062009 |
| protease binding | 0.0133712327786606 | bayes_pls_golite062009 |
