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Protein Overview: ALP14_SCHPO

General Information:
Name(s) found: ALP14_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 809 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDQEEDYS KLPLESRIVH KVWKVRLSAY EECSKSFSLS ADGSDNCFEL WNNQSELWKS  60
   61 VLTDSNVAAQ EAGTAAFVAY CRFSDPSHLL KAREISVLSI SEKCLTSPRA GTRENALEAL 120
  121 MLLVEADSAA PVIESIIPSL SARSPKVIAS NVAAIASLVE QFGAKVIPSK MIIPHISNLF 180
  181 GHADKNVRKE ASRLTVNIYR WTGDPLKDLL FKDLRPVQTK ELESLFAELP TEPPKQTRFL 240
  241 KSQQPTSEPN VETQVEEQPA LENEESEPEP SDDQFDLVEE VDVLPNVDPN LETLMASSKW 300
  301 KDRKEALDKL LPVLSQPKIK DNDFFNLVAI LTKSVSKDAN IMVVINAAHC IQAMAKGLRS 360
  361 NFSKYASTSI NALLERSKEK KANVIESLSS AMDAVLATSS LDDLAELIAS FAGNKNPQIK 420
  421 SSCFSLFSRS FSNMTSLPSK FTVDTCAKAC VPGVSDTFEP VRSAAAEALG VLMKLVGERA 480
  481 INQYLSPLDD IRKSKIRSFY ETATVKAKAP TKKSKVKPSK QEESKVVVPS NAKAVKKSVV 540
  541 PSSPVVPSPR KATNKSLSMD VSKGNAFENG PLLPRPTTRP VSRGLSRGTS SSLQQKVKAS 600
  601 TPLNSGALNE TVQNLKNMEL DDPAPQPAKH SRVDRYEHPK VLEDNDSTIS SLESLKRENE 660
  661 ELREQLKVEH EENISMQKQL SELKGELNTL RSARKASPIG DRKPAFMRRA NTDFLELSTS 720
  721 PSFQRSVREF EPTRPKLYSS IDVNQRSPLA SAKTNGNFTF HAELPRSPFS SRANNINPDW 780
  781 TKAIDLAAKL KQKITEMKQT DQRHQGLIH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..489] PSI-BLAST 71.39794 Karyopherin beta2
    2 View Details [490..640] deduced N/A No confident structure predictions are available.
    3 View Details [641..809] MSA 4.246996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  3.05338750264476 bayes_pls_golite062009
  • binding
    		•  2.6374633159018 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.61566088685247 bayes_pls_golite062009
  • actin binding
    		•  1.76244772281676 bayes_pls_golite062009
  • protein binding
    		•  1.73688475473996 bayes_pls_golite062009
  • transporter activity
    		•  1.55621630624352 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.33334123659384 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.15447282085461 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.350388174853674 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.345785895390889 bayes_pls_golite062009
  • signal sequence binding
    		•  0.27824906981293 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.141331164449492 bayes_pls_golite062009
  • RNA binding
    		•  0.0287526191298597 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle