| Protein: | alp14 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 809 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp14.
| Description | E-value | Query Range |
Subject Range |
|
|
373.0 | [0..3] | [683..1] |
|
|
372.0 | [0..3] | [683..1] |
|
|
371.0 | [0..3] | [683..1] |
|
|
370.0 | [0..3] | [683..1] |
|
|
369.0 | [0..3] | [683..1] |
|
Region A: Residues: [1-489] |
1 11 21 31 41 51
| | | | | |
1 MSQDQEEDYS KLPLESRIVH KVWKVRLSAY EECSKSFSLS ADGSDNCFEL WNNQSELWKS 60
61 VLTDSNVAAQ EAGTAAFVAY CRFSDPSHLL KAREISVLSI SEKCLTSPRA GTRENALEAL 120
121 MLLVEADSAA PVIESIIPSL SARSPKVIAS NVAAIASLVE QFGAKVIPSK MIIPHISNLF 180
181 GHADKNVRKE ASRLTVNIYR WTGDPLKDLL FKDLRPVQTK ELESLFAELP TEPPKQTRFL 240
241 KSQQPTSEPN VETQVEEQPA LENEESEPEP SDDQFDLVEE VDVLPNVDPN LETLMASSKW 300
301 KDRKEALDKL LPVLSQPKIK DNDFFNLVAI LTKSVSKDAN IMVVINAAHC IQAMAKGLRS 360
361 NFSKYASTSI NALLERSKEK KANVIESLSS AMDAVLATSS LDDLAELIAS FAGNKNPQIK 420
421 SSCFSLFSRS FSNMTSLPSK FTVDTCAKAC VPGVSDTFEP VRSAAAEALG VLMKLVGERA 480
481 INQYLSPLD
|
| Detection Method: |  |
| Confidence: | 71.39794 |
| Match: | 1qbkB |
| Description: | Karyopherin beta2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein transporter activity | 3.05338750264476 | bayes_pls_golite062009 |
| binding | 2.6374633159018 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.61566088685247 | bayes_pls_golite062009 |
| actin binding | 1.76244772281676 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| transporter activity | 1.55621630624352 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.33334123659384 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.15447282085461 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.350388174853674 | bayes_pls_golite062009 |
| nucleic acid binding | 0.345785895390889 | bayes_pls_golite062009 |
| signal sequence binding | 0.27824906981293 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.141331164449492 | bayes_pls_golite062009 |
| RNA binding | 0.0287526191298597 | bayes_pls_golite062009 |
|
Region A: Residues: [490-640] |
1 11 21 31 41 51
| | | | | |
1 DIRKSKIRSF YETATVKAKA PTKKSKVKPS KQEESKVVVP SNAKAVKKSV VPSSPVVPSP 60
61 RKATNKSLSM DVSKGNAFEN GPLLPRPTTR PVSRGLSRGT SSSLQQKVKA STPLNSGALN 120
121 ETVQNLKNME LDDPAPQPAK HSRVDRYEHP K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [641-809] |
1 11 21 31 41 51
| | | | | |
1 VLEDNDSTIS SLESLKRENE ELREQLKVEH EENISMQKQL SELKGELNTL RSARKASPIG 60
61 DRKPAFMRRA NTDFLELSTS PSFQRSVREF EPTRPKLYSS IDVNQRSPLA SAKTNGNFTF 120
121 HAELPRSPFS SRANNINPDW TKAIDLAAKL KQKITEMKQT DQRHQGLIH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
