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Protein Overview: KDM5D_MOUSE

General Information:
Name(s) found: KDM5D_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|5823129|gb|AAD53048.1|AF127244_1 Smcy [Mus musculus] [NCBI NR]
  • gi|33859626|ref|NP_035549.1| jumonji, AT rich interactive domain 1D (Rbp2 like) [Mus musculus] [NCBI NR]
  • gi|17368534|sp|Q62240.2|KDM5D_MOUSE RecName: Full=Lysine-specific demethylase 5D; AltName: Full=Histone demethylase JARID1D; AltName: Full=Jumonji/ARID domain-containing protein 1D; AltName: Full=Protein SmcY; AltName: Full=Histocompatibility Y antigen; S [NCBI NR]
  • gi|148706190|gb|EDL38137.1| jumonji, AT rich interactive domain 1D (Rbp2 like), isoform CRA_c [Mus musculus] [NCBI NR]
  • Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 [Swiss-Prot]
  • (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein) (Histocompatibility Y antigen) (H-Y) [Swiss-Prot]
  • Histone demethylase JARID1D OS=Mus musculus GN=Jarid1d PE=2 SV=2 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):None SmcY protein [hmr_yeast5_DM3-1_pombe.fasta]
  • jumonji, AT rich interactive domain 1D (Rbp2 like); selected mouse cDNA on the Y [HMR_022704-rand.fasta]
  • Jumonji/ARID domain-containing protein 1D [ipi.MOUSE.v3.06.fasta]
  • jumonji, AT rich interactive domain 1D (Rbp2 like) [Mus musculus]gi|5823129|gb|AAD53048.1| Smcy [Mus musculus]gi|17368534|sp|Q62240|JD1D_MOUSE Jumonji/ARID domain-containing protein 1D (SmcY protein) (Histocompatibility Y antigen) (H-Y) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Jumonji/ARID domain-containing protein 1D [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • jumonji, AT rich interactive domain 1D (Rbp2 like) [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Histone demethylase JARID1D (Jumonji/ARID domain-containing protein 1D) (Protein SmcY) (Histocompatibility Y antigen) (H-Y) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • jumonji, AT rich interactive domain 1D (Rbp2 like), isoform CRA_c [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Smcy [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1D [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Jarid1d Isoform 1 of Histone demethylase JARID1D [mouse-ipi-250309-contam.fasta]
  • Jumonji/ARID domain-containing protein 1D (SmcY protein) (Histocompatibility Y antigen) (H-Y) [nr-271106-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Jarid1d Jumonji/ARID domain-containing protein 1D [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=Jarid1d Isoform 1 of Histone demethylase JARID1D ENSMUSG00000056673 IPI00123375 IPI00828782 IPI00850747 IPI00848809 IPI00848997 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • lysine-specific demethylase 5D [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00123375.1|SWISS-PROT:Q62240-1|TREMBL:Q8BQM3|ENSEMBL:ENSMUSP00000061095|REFSEQ:NP_035549 Tax_Id=10090 Gene_Symbol=Jarid1d Isoform 1 of Histone demethylase JARID1D [ipi.MOUSE.fasta.20090209]
  • Isoform 1 of Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=Kdm5d Isoform 1 of Lysine-specific demethylase 5D [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
  • sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 [uniprot.sptr.mouse.20130102]
    • Organism: Mus musculus
    Length: 1548 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    intracellular [IEA]
    Biological Process: chromatin modification [IEA]
    oxidation reduction [IEA]
    Molecular Function: DNA binding [IEA]
    oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]
    metal ion binding [IEA]
    oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPGSDDFLP PPECPVFEPS WAEFRDPLGY IAKIRPIAEK SGICKIRPPA DWQPPFAVEV  60
   61 DNFRFTPRIQ RLNELEAQTR VKLNYLDQIA KFWEIQGSSL KIPNVERKIL DLYSLNKIVM 120
  121 EEGGYEAICK DRRWARVAQR LNYPSGKNIG SLLRSHYERI IYPYEIFQSG ANLVQCNTDP 180
  181 FDSEERDKEY KPHSIPLRQS VQPSKFSCYS RRGKRLQPEP EPTEEDIEKN PELKKLQIYG 240
  241 AGPKMIGLGL KAKEKTLRKK DSKQPDKEEV TCPATIVVKG EASEFGKVTS AFSDKNLNHS 300
  301 FEPCMKMTMQ LRNNHSSTQF MNSYVCRICS RGDEVDKFLL CDGCSDNYHI FCLLPPLSEV 360
  361 PKGVWRCPKC ILAECKSPPE AFGFEQATQE YTLQSFGEMA DSFKADYFNM PVHMVPTEVV 420
  421 EKEFWRLVSS IEEDVTVEYG ADIHSKEFGS GFPVNNSKWD LSPEEKEYAA CGWNLNVMPV 480
  481 LDQSVLCHIN ADISGMKVPW LYVGMVFSAF CWHIEDHWSY SINYLHWGEP KTWYGVPSLA 540
  541 AEHLEDVMKR LTPELFDSQP DLLHQLVTLM NPNTLMSHGV PVVRTNQCAG EFVITFPRAY 600
  601 HSGFNQGYNF AEAVNFCTAD WLPVGRQCIE HYRRLRRYCV FSHEELICKM AAFPEKLDLN 660
  661 LAVAVHKEMF IMVQEERRLR KTLLEKGITE AEREAFELLP DDERQCIKCK TTCFLSALAC 720
  721 YDCPDSLVCL SHINDLCKCS RNRQYLRYRY TLDELPAMLQ KLKIRAESFD NWANKVQAAL 780
  781 EVEDGRKRSF EELRALESEA RDRRFPNSEL LQRLKKCLTE AEACISQVLG LISNSEDRLQ 840
  841 TPQITLTELQ LLLKQMGTLP CTMHQIDEVK DVLQQVESYQ IETREALTSL PYSLEILQSL 900
  901 MEKGQQLRVE VPEAHQLEEL LEQAQWLDQV KQALAPSGQR HSLVIMKKLL VMGTKVASSP 960
  961 SVNKARAELQ ELLTIAECWE EKAHFCLKAS QKHSPATLEV IIREAENIPV YLPNIQSLKE1020
 1021 ALTKAQAWIA DVNEIQNGDH YPCLDDLEGL VAVGRDLPVE LEELRQLENQ VLTAHSWKEK1080
 1081 ASKTFLKKNS CYTLLEVLCP CADAGSVSTK RSRWIEKEMG LYKYDTELLG LSAQDLRDPG1140
 1141 SVIMAFKEGE EKEKEGILHL RHINSAKPSP MSSSMNASAT SICICGQVCA GVESLQCDLC1200
 1201 HDWFHGQCVT VPHLLSSVRA SHTSSQLLAW WEWDTKFLCP LCMRSRRPRL ETILSLLVGL1260
 1261 QRLSVRLPEG EALQCLTERA IGWQGRARQA LASEDVTALL KQLEKSRQQL QDELRHKKPP1320
 1321 TLPSGFAFDC LTENSGKDIL KEEEELVLNE ERIKSSEKIV PKESSCKGDK ELLPSLLSQL1380
 1381 TGPVLELPEA TRAPLEELMM EGDLLEVTLD ENYSIWQLLQ AGQNPNLERI HTLLELEKPE1440
 1441 NPGNWSEEQT PERRRQRRQK VVLSRKGEDF TQKELESKRV KSSRIKPKEE KFQKPILGDN1500
 1501 VLYTHHTEHT NILKEHINSV QGKDPSPSSS FPSLTPLLHL SYFHQQKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle