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Protein Overview: gi|109481861, gi...

General Information:
Name(s) found: gi|186910249 [NCBI NR]
gi|149067174 [NCBI NR]
gi|109481861 [NCBI NR]
gi|109480476 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|186910249|ref|NP_001119563.1| small nuclear ribonucleoprotein polypeptide F [Rattus norvegicus] [NCBI NR]
  • gi|149067174|gb|EDM16907.1| rCG48672 [Rattus norvegicus] [NCBI NR]
  • gi|109481861|ref|XP_001080328.1| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Rattus norvegicus] [NCBI NR]
  • gi|109480476|ref|XP_001058626.1| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 86 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [UNKNOWN]
    cytosol [UNKNOWN]
    U7 snRNP [UNKNOWN]
    small nuclear ribonucleoprotein complex [UNKNOWN]
    nucleoplasm [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    spliceosomal snRNP assembly [UNKNOWN]
    Molecular Function: RNA binding [UNKNOWN]
    protein binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPLNPKPF LNGLTGKPVM VKLKWGMEYK GYLVSVDGYM NMQLANTEEY IDGALSGHLG  60
   61 EVLIRCNNVL YIRGVEEEEE DGEMRE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] PSI-BLAST 16.09691 Small nuclear ribonucleoprotein F, Smf


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle