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Protein Overview: gi|149023280, gi...

General Information:
Name(s) found: gi|189339196 [NCBI NR]
gi|165971421 [NCBI NR]
gi|149023280 [NCBI NR]
gi|109470670 [NCBI NR]
gi|109468821 [NCBI NR]
Description(s) found:
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  • gi|189339196|ref|NP_599185.1| small nuclear ribonucleoprotein polypeptide B [Rattus norvegicus] [NCBI NR]
  • gi|165971421|gb|AAI58687.1| Snrpb protein [Rattus norvegicus] [NCBI NR]
  • gi|149023280|gb|EDL80174.1| rCG26118, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • gi|109470670|ref|XP_001079072.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [Rattus norvegicus] [NCBI NR]
  • gi|109468821|ref|XP_001059527.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [Rattus norvegicus] [NCBI NR]
  • Snrpb protein [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • small nuclear ribonucleoprotein polypeptide B [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG26118, isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: similar to Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Snrpb Snrpb protein [rat-ipi-250309-contam.fasta]
  • RCG26118, isoform CRA_a OS=Rattus norvegicus GN=Snrpb [011711_HMR.fasta]
  • RCG26118, isoform CRA_a OS=Rattus norvegicus GN=Snrpb PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Small nuclear ribonucleoprotein-associated protein OS=Rattus norvegicus GN=Snrpb PE=2 SV=1 [20141208_RAT.fasta]
  • Isoform of P17136, Small nuclear ribonucleoprotein-associated protein OS=Rattus norvegicus GN=Snrpb PE=2 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][TAS]
    cytoplasm [UNKNOWN][IEA]
    histone pre-mRNA 3'end processing complex [IEA]
    cytosol [UNKNOWN]
    U7 snRNP [UNKNOWN]
    nucleoplasm [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    spliceosomal snRNP assembly [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]
    histone pre-mRNA DCP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNSKQAE  60
   61 REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA AGGPGIGRAA GRGIPAGVPM 120
  121 PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV AAAAAAATAS IAGAPTQYPP GRGGPPPPMG 180
  181 RGAPPPGMMG PPPGMRPPMG PPMGIPPGRG TPMGMPPPGM RPPPPGMRGL L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] PSI-BLAST 26.39794 B core SNRNP protein
    2 View Details [90..231] FFAS03 2.8 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle