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Protein Overview: NBS1_ARATH

General Information:
Name(s) found: NBS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|76782245|gb|ABA54896.1| NBS1 [Arabidopsis thaliana] [NCBI NR]
  • gi|145338027|ref|NP_186917.2| NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) [Arabidopsis thaliana] [NCBI NR]
  • Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana GN=NBS1 PE=1 SV=1 [Swiss-Prot]
  • | Symbols: ATNBS1, NBS1 | NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) | chr3:576385-579233 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • NBS1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome 1 | chr3:576378-579226 FORWARD LENGTH=542 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • NBS1 OS=Arabidopsis thaliana GN=NBS1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 542 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: reciprocal meiotic recombination [IGI]
    synapsis [IGI]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWGLFPVDP LSGEDKYYIF SKGIYKVGRK GCDIIINKDK GVSRIHAELT FDATTVSTSR  60
   61 RNKSSSDTSS FVIRVKDCSK YGTFVKTDLG TKDKVHELSN KEKILQDGDV IAFGTGSAIY 120
  121 RLSLIPLVFY LCPSSETFKV DQPVQDAVSS IGARISPTLS EECTHVLLEP RMQVNEALIN 180
  181 AILAKKTIIL TNWVMLLAEK SICSEIPGYS QYRPSVMVEE ALVDVLELNV REKCLEGFTF 240
  241 VLEPTDTYRF GCSFPSLLEV CGAETVTIED ISSMSQDSQF GEINRMICVI PKSAGDKFGR 300
  301 FKHLSLLSRV NEMDLVCAVF SGNLPSTSLI PPSVVISSSC STDETVVADS EAEEEETTSS 360
  361 VHMIDATEKA ETPEKPAAIV IEDSPVTILE ETSNLNEFKS VNLLADTESR GHMDEKNSSD 420
  421 SVTIRRDRND EAETGKSEII YTQDLIVRDL RSTRKVQSTG GEGVVDFKRF RKGNVTCGNS 480
  481 FSSLIPFAKD PYKEYDSWDV TDFMKEEKKR KQMEAIAEDL FKTEKARKRG TAGSIRGFLS 540
  541 GS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 8.522879 No description for 2jpeA was found.
    2 View Details [109..331] PSI-BLAST 31.522879 No description for 3cojX was found.
    3 View Details [332..542] MSA 1.155995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle