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Protein Overview: Lsd-2-PC

General Information:
Name(s) found: Lsd-2-PC / FBpp0110269 [FlyBase]
Description(s) found:
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  • gi|116007164|ref|NP_001036277.1| lipid storage droplet-2, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|113193609|gb|ABI30982.1| lipid storage droplet-2, isoform C [Drosophila melanogaster] [NCBI NR]
  • The gene Lipid storage droplet-2 is referred to in FlyBase by the symbol Dmel\Lsd-2 (CG9057, FBgn0030608). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:14965489..14970236. It has the cytological map location 13A8-13A9. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: lipid metabolic process; lipid particle transport along microtubule; regulation of transport; sequestering of triglyceride; lipid storage. 20 alleles are reported. The phenotypes of these alleles are annotated with: fat body; nurse cell. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • type=protein; loc=X:complement(14966305..14966681,14966788..14967000,14967970..14968407,14969781..14969973); ID=FBpp0110269; name=Lsd-2-PC; parent=FBgn0030608,FBtr0110969; dbxref=FlyBase:FBpp0110269,FlyBase_Annotation_IDs:CG9057-PC,REFSEQ:NP_001036277,GB_ [fly-100309-contam.fasta]
  • Lipid storage droplet-2 CG9057-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG9057-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(14966305..14966681,14966788..14967000,14967970..14968407,14969781..14969973); ID=FBpp0110269; name=Lsd-2-PC; parent=FBgn0030608,FBtr0110969; dbxref=FlyBase:FBpp0110269,FlyBase_Annotation_IDs:CG9057-PC,REFSEQ:NP_001036277,GB_protein:ABI30982; MD5=ff918678be98a5f0157a30a1af96cb1a; length=406; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(14966305..14966681,14966788..14967000,14967970..14968407,14969781..14969973); ID=FBpp0110269; name=Lsd-2-PC; parent=FBgn0030608,FBtr0110969; dbxref=FlyBase:FBpp0110269,FlyBase_Annotation_IDs:CG9057-PC,REFSEQ:NP_001036277,GB_protein:ABI30982; MD5=ff918678be98a5f0157a30a1af96cb1a; length=406; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Lipid storage droplet-2, isoform C OS=Drosophila melanogaster GN=Lsd-2 PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(14966305..14966681,14966788..14967000,14967970..14968407,14969781..14969973); ID=FBpp0110269; name=Lsd-2-PC; parent=FBgn0030608,FBtr0110969; dbxref=FlyBase:FBpp0110269,FlyBase_Annotation_IDs:CG9057-PC,REFSEQ:NP_001036277,GB_protein:ABI30982,FlyMine:FBpp0110269,modMine:FBpp0110269; MD5=ff918678be98a5f0157a30a1af96cb1a; length=406; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA][NAS]
    Biological Process: regulation of transport [IMP]
    lipid storage [IMP][NAS]
    lipid metabolic process [IMP]
    sequestering of triglyceride [IMP]
    lipid particle transport along microtubule [IMP]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAEQKHAT GNGTTGNGTA MNDVDQPKDA KDLLPHLESL ERIIKLPVVN AAWDKSQDVY  60
   61 GKVKGKNRVF EWALTAAEDC VTRAVTTAAP FVTKLDRPIA YVDQTLVKGI DKLEVKAPII 120
  121 KDTPQEIYNQ AKSKVIDVVQ PHLERVVKFK AAGQQKAASL KDLAWQKANE VLATQYGSLA 180
  181 VNGVDTTTAL AERLLEYYFP KCESDVEEDN VIIVGESYDR DHDQEIDDRF LVAASTVFLS 240
  241 MSLKIITEIV EYVRRNPEIV GIIDRELNKF MVSTHKPTQR QMPVPASEDP VLHTVQTVGR 300
  301 LSNKISRRVY RNVSRQIKQV QKGNINDYLS SLIAALKLHQ YINFINSSMG TNVEQSGGSS 360
  361 SDACSPFGTT TSTTTTTTTS STSNNKPVVA LPHVAKSKRA PAVSSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] MSA 6.076975 View MSA. No confident structure predictions are available.
    2 View Details [140..406] PSI-BLAST 49.30103 Crystal Structure of the C-terminus of TIP47

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.1669494783649 bayes_pls_golite062009
  • protein binding
    		•  0.505707524948553 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle