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Protein Overview: gi|110288962

General Information:
Name(s) found: gi|110288962 [NCBI NR]
Description(s) found:
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  • gi|110288962|gb|AAP53313.2| transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWKANGKWR MCVDFTDLNK ACPKDHFPLP RIDQLVDSTA GCELLSFLDA YSGYHQISMA  60
   61 KEDEEKTALI TPFGETLSSA RSKVHLATNS ENNVEAYVDD IVVKTKTSDS LIDDLRETFD 120
  121 NLRRYRLMLN PEKCTFGVSS GKLLGFLVSG RGIEANPNKI KAIENMKSPT RLKELRHYFE 180
  181 AHRVTVVSSF PLGEVVRNKD VVGRIAKWVV ELSQFDVRFV PRTAIKSQVL ADFVADWTMP 240
  241 DNRSDNQVDN ETWTMAFDGA LNNQGAGAGF ILTSPSGDQF KHAIHLNFRA TNNTAEYEGL 300
  301 LAGIKAAAAL GVRRLIVKGD SELVANQVHK DYKCSSPELS KYLAEVRKLE KMFNGIEVRH 360
  361 VYRKGNIEPD DLVRRASRRE PLEPGTFLDV LTRPSVKEAS GEDSPVAPNI S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..411] PSI-BLAST 93.522879 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.518931870161593 bayes_pls_golite062009
  • transferase activity
    		•  0.35636561630516 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.32441153240842 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.29860211454192 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.0603497936698201 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.0602875211585996 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle