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Protein Overview: gi|108862099, gi...

General Information:
Name(s) found: gi|215694863 [NCBI NR]
gi|115487010 [NCBI NR]
gi|113648499 [NCBI NR]
gi|108862099 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • gi|215694863|dbj|BAG90054.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115487010|ref|NP_001065992.1| Os12g0116000 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113648499|dbj|BAF29011.1| Os12g0116000 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108862099|gb|ABA96293.2| Vacuolar sorting receptor 1 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 728 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPWTRCSCC LTESGSLPSA CFTNSRKSRP LPKSHQRVHP KSIHESLPHS NCLPPPSKSN  60
   61 LSSHLRRFRH APSTPRSILS PPIRSNPQLG STNCKGLGAD WSMGLRSPNS MLWLVLLVWA 120
  121 ALLCGSCHGR FVVEKNSLKV TSPSDMKGTY ECAIGNFGVP QYGGTMVGVV AYPKANKKAC 180
  181 KSFDDFDISY KAKPGSLPTF LLVDRGDCFF TKKAWNAQNA GAAAILVADD KTEPLITMDT 240
  241 PEESGNTDYL ENITIPSALI TKSFGDKLKK AIDNGDMVNV NLDWRESLPH PDERVEYEFW 300
  301 TNSNDECGPK CDSQIDFVKS FKGAAQVLEK KGYTQFTPHY ITWYCPDSFI LSKQCKSQCI 360
  361 NHGRYCAPDP EQDFSKGYDG KDVVVQNLRQ VCVYKVAKEH GKPWLWWDYV TDFAIRCPMK 420
  421 EKKYTKECAD GVIKSLGLDH KAIDKCIADP DADKENPVLK AEQDAQIGKG SRGDVTILPT 480
  481 LVINNRQYRG KLDKGAVLKA ICAGFRETTE PAVCLSEDIQ TNECLENNGG CWQDKAANIS 540
  541 ACKDTFRGRV CECPVVKGVK FVGDGYTHCE ASGSGHCEIN NGGCWKDSRH GRTYSACTND 600
  601 GCKCPDGFKG DGVHKCEDID ECKERTACQC KECKCKNTWG SYECGCSGGL LYMKEHDTCI 660
  661 SKNAATEVGW NFLWVIFFGL VVAGIAGYAV YKYRIRRYMD SEIRAIMAQY MPLDNQGDVP 720
  721 NHSHHIEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] deduced N/A No confident structure predictions are available.
    2 View Details [130..301] PSI-BLAST 13.0 Structure of C5a peptidase- a key virulence factor from Streptococcus
    3 View Details [302..654] PSI-BLAST 30.69897 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    4 View Details [655..728] PSI-BLAST 12.522879 NMR structure of the human NOTCH-1 ligand binding region

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle