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Protein Overview: gi|108864175

General Information:
Name(s) found: gi|108864175 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108864175|gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1572 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAGDQRRG GVAPEREEGR GKRRGRSTAH PETAKAAETA DGAEEDGGAA RDDEGDGAPA  60
   61 VGGRSGAADG VGGNTAKRTE VSPKSIWDAT AVEASGGTAD HACQEAAYLM MARLRERHNY 120
  121 IFHDTAYRYH PRRANSDDVS SFRPTAGEND TTFGHMCAVM RGLDRMHSDL HKATKALNDG 180
  181 KLMRIVTLKD EIARLKKENA QLKGLPAPGG VRIRSTPRKR TTAPVRIQLA PRNPPPAAAP 240
  241 AAPPVPPAVP AAPAPAPAFT LSFAPASAAR GSASGTGGWL SATPSGSGET DLSGSRSRSE 300
  301 GPGCLFGMVY TRTGSRATGE GSNGEERADG VHPNSDSGNG PPPLPENPTL AQVMAHQTQM 360
  361 MAAMMQQMQQ QHQQMHQRMM QHAEQQHQQF GPPPPQSKLP EFLRVRPPTF SSTTNPMEAN 420
  421 DWLHAIEKKL NLLQCNDQEK VAFATHQLQG PASAWWDNHM ATRPPGTEVT WAEFCRSFRK 480
  481 AQVPDGVVAQ KKREFRALHQ GNRTVTEYLH EFNRLARYAP EDVRTDAEKQ EKFMAGLDDE 540
  541 LTNQLISGDY ADFERLVDKA IRQEDQRNKM DRKRKAAQFR APQGSHQRPR LTPGQQGGPT 600
  601 TMIVRQHRPF NPSNFHQGTS GSQNHHGSQP NRGTAPRPPM APAQSGQPAQ AKKETGAKPG 660
  661 SCFNCGELGH FADKCPKPRR AGPRFIQARV NHASAEEAQA APEVVLGTFP VNSIPATVLF 720
  721 DSGATHSFIS KKFVGMHGLI REELSTPMRV HTPGNSSTSV QFSPSITIEI QRSPFLANLI 780
  781 LLESKDLDVI LGMDWLTKFK GVIDCANRTV TLTNEKGETV VYKSLVSPKK GVSLNQIETE 840
  841 IPVDTVEKNL RKLEDIPIVC EYPEVFLEDL TTMPPKREIE FRIDLAPGTA PIYKRPYRMA 900
  901 ANELAEVKKQ VDEQLQKGYI RPSTSPWGAP VIFVEKKDKT KRMCVDYRAL NEVTIKNKYP 960
  961 LPRIDDLFDQ LKGAKVFSKV DLRSGYHQLR IREEDIPKTA FTTRYGLYEC TVMSFGLTNA1020
 1021 PAFFMNLMNK VFMEFLDKFV VVFIDDILIY SKSEEEHEQH LRLVLEKLKE HQLYAKFSKC1080
 1081 DFWLTEVKFL GHVITAQGVA VDPSNVESVT KWTPPKTVSQ IRSFLGLAGY YRRFIENFSR1140
 1141 IARPMTQLLK KDEKFKWTAE CDKGFEELKK KLVSAPVLIL PDPTKDFQVY CDASRHGLGC1200
 1201 VLMQEGRVVA YASRQLRPHE GNYPTHDLEL AAVVHALKIW RHYLIGNRCE VYTDHKSLKY1260
 1261 IFTQPDLNLR QRRWLELIKD YDMSIHYHPG KANVVADALS RKSYCTALCV EGMCEELRQE1320
 1321 FEHLNVGIVE HGFVAALEAR PTLVDQVRAA QVNDSEIAEL KKNMRVGKAR DFHEDEHGTI1380
 1381 WMGERLCVPD DKELKDLILT EAHQTQYSIH PGSTKMYQDL KEKFWWVSMR REIAEFVALC1440
 1441 DVCQRVKAEH QRPAGLLQPL QIPEWKWEEI GMDFITGLPR TSSGHDSIWV VVDRLTKVAH1500
 1501 FIPVHTTYTG KRLAELYLAR IMRLHGVPRK IVSDRGSQFT SKFWQKLQEE LGTRLNFSTA1560
 1561 YHPQTDDYAI CY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] Pfam 10.086186 No description for PF05754.6 was found. No confident structure predictions are available.
    2 View Details [137..252] deduced N/A No confident structure predictions are available.
    3 View Details [253..520] PSI-BLAST 25.39794 HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein
    4 View Details [521..634] PSI-BLAST 30.154902 No description for 3dikA was found.
    5 View Details [635..701] PSI-BLAST 4.0 HIV nucleocapsid
    6 View Details [702..852] PSI-BLAST 16.522879 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    7 View Details [853..1408] PSI-BLAST 142.0 No description for 2rf2A was found.
    8 View Details [1409..1572] PSI-BLAST 33.522879 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle